Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579725.1 |
| length | 628 |
| lncRNA type | inter_gene |
| GC content | 0.48 |
| exon number | 3 |
| gene id | LOC117599260 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047610.1 |
| NCBI id | CM018556.1 |
| chromosome length | 25111544 |
| location | 24010675 ~ 24013004 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004579726.1 | lncRNA | upstream | 7294 | 24002549 ~ 24003381 (+) | True | LOC117599261 |
| TU308096 | lncRNA | upstream | 92284 | 23917881 ~ 23918391 (+) | True | G260232 |
| TU308080 | lncRNA | upstream | 141119 | 23867651 ~ 23869556 (+) | True | G260217 |
| TU308086 | lncRNA | upstream | 148105 | 23861642 ~ 23862570 (+) | True | G260223 |
| TU308085 | lncRNA | upstream | 183044 | 23826892 ~ 23827631 (+) | True | G260222 |
| TU308299 | lncRNA | downstream | 10372 | 24023376 ~ 24030335 (+) | True | G260410 |
| TU308322 | lncRNA | downstream | 118714 | 24131718 ~ 24131958 (+) | True | G260430 |
| TU308323 | lncRNA | downstream | 122790 | 24135794 ~ 24140619 (+) | True | G260431 |
| TU308326 | lncRNA | downstream | 132986 | 24145990 ~ 24146339 (+) | True | G260434 |
| TU308296 | lncRNA | downstream | 145862 | 24158866 ~ 24161640 (+) | False | G260409 |
| XM_034311922.1 | mRNA | upstream | 42789 | 23951660 ~ 23967886 (+) | False | mcoln3b |
| XM_026921140.2 | mRNA | upstream | 42789 | 23951661 ~ 23967886 (+) | True | mcoln3b |
| XM_026921141.2 | mRNA | upstream | 43991 | 23951661 ~ 23966684 (+) | False | mcoln3b |
| XM_026920473.2 | mRNA | upstream | 88699 | 23888706 ~ 23921976 (+) | True | syde2 |
| XM_026920474.2 | mRNA | upstream | 88701 | 23888706 ~ 23921974 (+) | False | syde2 |
| XM_026920938.2 | mRNA | downstream | 35012 | 24048016 ~ 24055524 (+) | True | gpx7 |
| XM_026920901.2 | mRNA | downstream | 78118 | 24091122 ~ 24131107 (+) | True | slc1a7b |
| XM_026920900.2 | mRNA | downstream | 78118 | 24091122 ~ 24131107 (+) | False | slc1a7b |
| XM_034311701.1 | mRNA | downstream | 153716 | 24166720 ~ 24184554 (+) | False | LOC113530931 |
| XM_034311699.1 | mRNA | downstream | 153717 | 24166721 ~ 24188371 (+) | False | LOC113530931 |
| TU307780 | other | upstream | 621361 | 23387538 ~ 23389314 (+) | True | G259993 |
| TU307769 | other | upstream | 627022 | 23371747 ~ 23383653 (+) | True | LOC117599309 |
| TU307771 | other | upstream | 627022 | 23371747 ~ 23383653 (+) | False | LOC117599309 |
| XR_004579671.1 | other | upstream | 1331125 | 22671625 ~ 22679550 (+) | False | LOC113530514 |
| trnal-uaa_2 | other | upstream | 1698787 | 22311806 ~ 22311888 (+) | True | trnal-uaa_2 |
| TU308306 | other | downstream | 19223 | 24032227 ~ 24032724 (+) | True | G260415 |
| TU308384 | other | downstream | 255573 | 24268577 ~ 24269267 (+) | True | G260483 |
| XR_004579660.1 | other | downstream | 611933 | 24624937 ~ 24634545 (+) | False | ddx58 |
