Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579726.1 |
| length | 387 |
| lncRNA type | inter_gene |
| GC content | 0.48 |
| exon number | 3 |
| gene id | LOC117599261 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047610.1 |
| NCBI id | CM018556.1 |
| chromosome length | 25111544 |
| location | 24002549 ~ 24003381 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko03460 | Fanconi anemia pathway |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU308096 | lncRNA | upstream | 84158 | 23917881 ~ 23918391 (+) | True | G260232 |
| TU308080 | lncRNA | upstream | 132993 | 23867651 ~ 23869556 (+) | True | G260217 |
| TU308086 | lncRNA | upstream | 139979 | 23861642 ~ 23862570 (+) | True | G260223 |
| TU308085 | lncRNA | upstream | 174918 | 23826892 ~ 23827631 (+) | True | G260222 |
| TU307893 | lncRNA | upstream | 440165 | 23527428 ~ 23562384 (+) | True | G260074 |
| XR_004579725.1 | lncRNA | downstream | 7294 | 24010675 ~ 24013004 (+) | True | LOC117599260 |
| TU308299 | lncRNA | downstream | 19995 | 24023376 ~ 24030335 (+) | True | G260410 |
| TU308322 | lncRNA | downstream | 128337 | 24131718 ~ 24131958 (+) | True | G260430 |
| TU308323 | lncRNA | downstream | 132413 | 24135794 ~ 24140619 (+) | True | G260431 |
| TU308326 | lncRNA | downstream | 142609 | 24145990 ~ 24146339 (+) | True | G260434 |
| XM_034311922.1 | mRNA | upstream | 34663 | 23951660 ~ 23967886 (+) | False | mcoln3b |
| XM_026921140.2 | mRNA | upstream | 34663 | 23951661 ~ 23967886 (+) | True | mcoln3b |
| XM_026921141.2 | mRNA | upstream | 35865 | 23951661 ~ 23966684 (+) | False | mcoln3b |
| XM_026920473.2 | mRNA | upstream | 80573 | 23888706 ~ 23921976 (+) | True | syde2 |
| XM_026920474.2 | mRNA | upstream | 80575 | 23888706 ~ 23921974 (+) | False | syde2 |
| XM_026920938.2 | mRNA | downstream | 44635 | 24048016 ~ 24055524 (+) | True | gpx7 |
| XM_026920901.2 | mRNA | downstream | 87741 | 24091122 ~ 24131107 (+) | True | slc1a7b |
| XM_026920900.2 | mRNA | downstream | 87741 | 24091122 ~ 24131107 (+) | False | slc1a7b |
| XM_034311701.1 | mRNA | downstream | 163339 | 24166720 ~ 24184554 (+) | False | LOC113530931 |
| XM_034311699.1 | mRNA | downstream | 163340 | 24166721 ~ 24188371 (+) | False | LOC113530931 |
| TU307780 | other | upstream | 613235 | 23387538 ~ 23389314 (+) | True | G259993 |
| TU307769 | other | upstream | 618896 | 23371747 ~ 23383653 (+) | True | LOC117599309 |
| TU307771 | other | upstream | 618896 | 23371747 ~ 23383653 (+) | False | LOC117599309 |
| XR_004579671.1 | other | upstream | 1322999 | 22671625 ~ 22679550 (+) | False | LOC113530514 |
| trnal-uaa_2 | other | upstream | 1690661 | 22311806 ~ 22311888 (+) | True | trnal-uaa_2 |
| TU308306 | other | downstream | 28846 | 24032227 ~ 24032724 (+) | True | G260415 |
| TU308384 | other | downstream | 265196 | 24268577 ~ 24269267 (+) | True | G260483 |
| XR_004579660.1 | other | downstream | 621556 | 24624937 ~ 24634545 (+) | False | ddx58 |
