RNA id: XR_004579728.1



Basic Information


Item Value
RNA id XR_004579728.1
length 414
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC117599265
representative True

Chromosome Information


Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20696985 ~ 20699668 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


TAGCCTTGGTAGCCACCTGTAACAGCCAATAAGATGTGACCAGTGCTCGAGCATCTCTTGTCAGTGATCTGAATTCCTCGCGcgacgaggaaaaaaaaacactagaatGAGCTACAAACTTTTACCACAGACACAAGAAGCATCTGACAATAAAACACCCGTTAACATTAAAGTACATGttaatatacttttaaaaagCTCAGGCTCCTTTCTTCCCGGACCATGATGGCTAGCTGGCTAATACACACTGATGCCAAAGCCCTTACCGGCTACTGAACTGGAATGAGCAGCCAGATaaagaATCTTTGTCTGTCCATGAAGTCTTTCCAAGTTATGAGACCCTTCTCCTGGAATTGTTACGTCCAAGACTTGTGATGCTACTTTTGCGGGAGAGGATGGGAGTGGGCGCAGTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU305792 lncRNA upstream 16047 20663682 ~ 20680938 (+) True G258273
TU305646 lncRNA upstream 39918 20611541 ~ 20657067 (+) True G258162
TU305640 lncRNA upstream 120196 20567790 ~ 20576789 (+) True G258156
TU305574 lncRNA upstream 310172 20369995 ~ 20386813 (+) True G258097
XR_004579729.1 lncRNA downstream 8447 20708115 ~ 20711958 (+) True LOC117599266
TU305794 lncRNA downstream 55024 20754692 ~ 20756538 (+) True G258275
TU305900 lncRNA downstream 86574 20786242 ~ 20790145 (+) True G258362
TU305939 lncRNA downstream 203479 20903147 ~ 20907459 (+) False ubxn10
XR_004579744.1 lncRNA downstream 209148 20908816 ~ 20911082 (+) True LOC117599282
XM_026920339.2 mRNA upstream 5371 20689186 ~ 20691614 (+) True LOC113530407
XM_026921045.2 mRNA upstream 10207 20684365 ~ 20686778 (+) True LOC113530755
XM_026921162.2 mRNA upstream 16915 20668113 ~ 20680070 (+) True pip4k2ca
XM_026920287.2 mRNA upstream 30928 20661406 ~ 20666057 (+) True igfbp6b
XM_034311777.1 mRNA upstream 86272 20596806 ~ 20610713 (+) False lima1a
XM_026921277.2 mRNA downstream 20197 20719865 ~ 20729933 (+) True tspan31
XM_034311607.1 mRNA downstream 38076 20737744 ~ 20751871 (+) True march9
XM_034312195.1 mRNA downstream 184024 20883692 ~ 20886509 (+) False LOC113530777
XM_026921092.2 mRNA downstream 184196 20883864 ~ 20886509 (+) True LOC113530777
XM_026920955.2 mRNA downstream 200454 20900122 ~ 20902771 (+) True cptp
XR_003403172.2 other upstream 182790 20510244 ~ 20514195 (+) False LOC113530729
TU305571 other upstream 298271 20390809 ~ 20398714 (+) True G258096
TU304946 other upstream 1218090 19478302 ~ 19478895 (+) True G257622
trnae-cuc_34 other upstream 1663997 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 1785271 18879568 ~ 18911714 (+) False fmnl3
XR_004579743.1 other downstream 203437 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 203479 20903147 ~ 20905073 (+) False ubxn10
TU306101 other downstream 528652 21228320 ~ 21230871 (+) False si:ch73-290k24.5
TU306357 other downstream 838586 21538254 ~ 21542254 (+) False LOC117599233
trnal-uaa_2 other downstream 1612138 22311806 ~ 22311888 (+) True trnal-uaa_2

Expression Profile