Item | Value |
---|---|
RNA id | XR_004579728.1 |
length | 414 |
lncRNA type | inter_gene |
GC content | 0.45 |
exon number | 3 |
gene id | LOC117599265 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_047610.1 |
NCBI id | CM018556.1 |
chromosome length | 25111544 |
location | 20696985 ~ 20699668 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
species | striped catfish (Pangasianodon hypophthalmus) |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU305792 | lncRNA | upstream | 16047 | 20663682 ~ 20680938 (+) | True | G258273 |
TU305646 | lncRNA | upstream | 39918 | 20611541 ~ 20657067 (+) | True | G258162 |
TU305640 | lncRNA | upstream | 120196 | 20567790 ~ 20576789 (+) | True | G258156 |
TU305574 | lncRNA | upstream | 310172 | 20369995 ~ 20386813 (+) | True | G258097 |
XR_004579729.1 | lncRNA | downstream | 8447 | 20708115 ~ 20711958 (+) | True | LOC117599266 |
TU305794 | lncRNA | downstream | 55024 | 20754692 ~ 20756538 (+) | True | G258275 |
TU305900 | lncRNA | downstream | 86574 | 20786242 ~ 20790145 (+) | True | G258362 |
TU305939 | lncRNA | downstream | 203479 | 20903147 ~ 20907459 (+) | False | ubxn10 |
XR_004579744.1 | lncRNA | downstream | 209148 | 20908816 ~ 20911082 (+) | True | LOC117599282 |
XM_026920339.2 | mRNA | upstream | 5371 | 20689186 ~ 20691614 (+) | True | LOC113530407 |
XM_026921045.2 | mRNA | upstream | 10207 | 20684365 ~ 20686778 (+) | True | LOC113530755 |
XM_026921162.2 | mRNA | upstream | 16915 | 20668113 ~ 20680070 (+) | True | pip4k2ca |
XM_026920287.2 | mRNA | upstream | 30928 | 20661406 ~ 20666057 (+) | True | igfbp6b |
XM_034311777.1 | mRNA | upstream | 86272 | 20596806 ~ 20610713 (+) | False | lima1a |
XM_026921277.2 | mRNA | downstream | 20197 | 20719865 ~ 20729933 (+) | True | tspan31 |
XM_034311607.1 | mRNA | downstream | 38076 | 20737744 ~ 20751871 (+) | True | march9 |
XM_034312195.1 | mRNA | downstream | 184024 | 20883692 ~ 20886509 (+) | False | LOC113530777 |
XM_026921092.2 | mRNA | downstream | 184196 | 20883864 ~ 20886509 (+) | True | LOC113530777 |
XM_026920955.2 | mRNA | downstream | 200454 | 20900122 ~ 20902771 (+) | True | cptp |
XR_003403172.2 | other | upstream | 182790 | 20510244 ~ 20514195 (+) | False | LOC113530729 |
TU305571 | other | upstream | 298271 | 20390809 ~ 20398714 (+) | True | G258096 |
TU304946 | other | upstream | 1218090 | 19478302 ~ 19478895 (+) | True | G257622 |
trnae-cuc_34 | other | upstream | 1663997 | 19032917 ~ 19032988 (+) | True | trnae-cuc_34 |
TU304341 | other | upstream | 1785271 | 18879568 ~ 18911714 (+) | False | fmnl3 |
XR_004579743.1 | other | downstream | 203437 | 20903105 ~ 20907250 (+) | False | ubxn10 |
TU305940 | other | downstream | 203479 | 20903147 ~ 20905073 (+) | False | ubxn10 |
TU306101 | other | downstream | 528652 | 21228320 ~ 21230871 (+) | False | si:ch73-290k24.5 |
TU306357 | other | downstream | 838586 | 21538254 ~ 21542254 (+) | False | LOC117599233 |
trnal-uaa_2 | other | downstream | 1612138 | 22311806 ~ 22311888 (+) | True | trnal-uaa_2 |