Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579729.1 |
| length | 1138 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 3 |
| gene id | LOC117599266 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047610.1 |
| NCBI id | CM018556.1 |
| chromosome length | 25111544 |
| location | 20708115 ~ 20711958 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004579728.1 | lncRNA | upstream | 8447 | 20696985 ~ 20699668 (+) | True | LOC117599265 |
| TU305792 | lncRNA | upstream | 27177 | 20663682 ~ 20680938 (+) | True | G258273 |
| TU305646 | lncRNA | upstream | 51048 | 20611541 ~ 20657067 (+) | True | G258162 |
| TU305640 | lncRNA | upstream | 131326 | 20567790 ~ 20576789 (+) | True | G258156 |
| TU305574 | lncRNA | upstream | 321302 | 20369995 ~ 20386813 (+) | True | G258097 |
| TU305794 | lncRNA | downstream | 42734 | 20754692 ~ 20756538 (+) | True | G258275 |
| TU305900 | lncRNA | downstream | 74284 | 20786242 ~ 20790145 (+) | True | G258362 |
| TU305939 | lncRNA | downstream | 191189 | 20903147 ~ 20907459 (+) | False | ubxn10 |
| XR_004579744.1 | lncRNA | downstream | 196858 | 20908816 ~ 20911082 (+) | True | LOC117599282 |
| TU305997 | lncRNA | downstream | 263940 | 20975898 ~ 20976359 (+) | True | G258439 |
| XM_026920339.2 | mRNA | upstream | 16501 | 20689186 ~ 20691614 (+) | True | LOC113530407 |
| XM_026921045.2 | mRNA | upstream | 21337 | 20684365 ~ 20686778 (+) | True | LOC113530755 |
| XM_026921162.2 | mRNA | upstream | 28045 | 20668113 ~ 20680070 (+) | True | pip4k2ca |
| XM_026920287.2 | mRNA | upstream | 42058 | 20661406 ~ 20666057 (+) | True | igfbp6b |
| XM_026920827.2 | mRNA | upstream | 97402 | 20596937 ~ 20610713 (+) | False | lima1a |
| XM_026921277.2 | mRNA | downstream | 7907 | 20719865 ~ 20729933 (+) | True | tspan31 |
| XM_034311607.1 | mRNA | downstream | 25786 | 20737744 ~ 20751871 (+) | True | march9 |
| XM_034312195.1 | mRNA | downstream | 171734 | 20883692 ~ 20886509 (+) | False | LOC113530777 |
| XM_026921092.2 | mRNA | downstream | 171906 | 20883864 ~ 20886509 (+) | True | LOC113530777 |
| XM_026920955.2 | mRNA | downstream | 188164 | 20900122 ~ 20902771 (+) | True | cptp |
| XR_003403172.2 | other | upstream | 193920 | 20510244 ~ 20514195 (+) | False | LOC113530729 |
| TU305571 | other | upstream | 309401 | 20390809 ~ 20398714 (+) | True | G258096 |
| TU304946 | other | upstream | 1229220 | 19478302 ~ 19478895 (+) | True | G257622 |
| trnae-cuc_34 | other | upstream | 1675127 | 19032917 ~ 19032988 (+) | True | trnae-cuc_34 |
| TU304341 | other | upstream | 1796401 | 18879568 ~ 18911714 (+) | False | fmnl3 |
| XR_004579743.1 | other | downstream | 191147 | 20903105 ~ 20907250 (+) | False | ubxn10 |
| TU305940 | other | downstream | 191189 | 20903147 ~ 20905073 (+) | False | ubxn10 |
| TU306101 | other | downstream | 516362 | 21228320 ~ 21230871 (+) | False | si:ch73-290k24.5 |
| TU306357 | other | downstream | 826296 | 21538254 ~ 21542254 (+) | False | LOC117599233 |
| trnal-uaa_2 | other | downstream | 1599848 | 22311806 ~ 22311888 (+) | True | trnal-uaa_2 |
