RNA id: XR_004579739.1


Basic Information

Item Value
RNA id XR_004579739.1
length 487
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id LOC117599279
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10244041 ~ 10288684 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agcattaaaaataacagtACCTGTAAAACTGAAGCTGTCTTTTTGGGCTCCCATATCGAGCACTGCAACAAAGAAGGTGCAGATCTTGCCTTTAATTAAATGGTATGGAGAGAGCAACTGTACAACCGTACTGGGGAAGGACCTGTGAGATCTTGGGCAGCTTCTTGAAGGAATTTCTTGAGGGATGTTAGTacgaaacaggaaaaataagaGAACTCAATTATCTAGGTAGCCATGTTGAATAGGGTGTTGCTATCTGGAAGTGATCTGGAAGTTCTTAGAAGAGGAGGGAAGGGACCCAGTGGAGAAATTCTTGAAGAAGTTAACTGCAACTGGAGATGGAGGAAGAGTTACTTTTATAGTGCTTCTGCAACTTGCAACTTCTCCCAGGCAGGCCCTACAGATGATAGTGTCTTAACACTGCACAGTGGATGAAGGGATGCTGgtgaaagagagaagtgatgtTCCAGAGGAGGAGTCTGTCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579652.1 lncRNA downstream 62153 10179788 ~ 10181888 (-) True LOC117599207
TU298869 lncRNA downstream 187958 10054877 ~ 10056083 (-) True G252479
TU298662 lncRNA downstream 323893 9917429 ~ 9920148 (-) True G252331
TU298642 lncRNA downstream 348516 9895284 ~ 9895525 (-) True G252311
TU298584 lncRNA downstream 394345 9847116 ~ 9849696 (-) True G252265
TU299029 lncRNA upstream 109323 10396395 ~ 10396740 (-) True G252610
TU299250 lncRNA upstream 368242 10655314 ~ 10655522 (-) True G252783
TU299304 lncRNA upstream 423323 10710395 ~ 10711491 (-) True G252833
TU299329 lncRNA upstream 491913 10778985 ~ 10779600 (-) True G252856
TU299332 lncRNA upstream 495063 10782135 ~ 10782588 (-) True G252859
XM_034311841.1 mRNA downstream 91319 10140734 ~ 10152722 (-) True emc1
XM_034311776.1 mRNA downstream 104750 10092732 ~ 10139291 (-) True ubr4
XM_026921428.2 mRNA downstream 152888 10065107 ~ 10091153 (-) True iffo2a
XM_026921430.2 mRNA downstream 152891 10065107 ~ 10091150 (-) False iffo2a
XM_026920735.2 mRNA downstream 181296 10057524 ~ 10062745 (-) True LOC113530596
XM_026921175.2 mRNA upstream 55726 10342798 ~ 10372696 (-) False megf6a
XM_026921174.2 mRNA upstream 55726 10342798 ~ 10372696 (-) True megf6a
XM_034311644.1 mRNA upstream 116105 10403177 ~ 10411529 (-) False ttc34
XM_026920375.2 mRNA upstream 116105 10403177 ~ 10411509 (-) False ttc34
XM_034311643.1 mRNA upstream 116105 10403177 ~ 10411509 (-) True ttc34
TU298725 other downstream 214048 10029492 ~ 10029993 (-) True G252373
XR_003403155.2 other downstream 1665441 8566656 ~ 8578600 (-) False ttll10
TU296847 other downstream 2734294 7476274 ~ 7509747 (-) False ctnnbip1
TU296070 other downstream 3936278 6304844 ~ 6307763 (-) False rps26
XR_003404646.1 other downstream 5095909 5148053 ~ 5148132 (-) True LOC113545697
XR_003403171.2 other upstream 173622 10460694 ~ 10469534 (-) False usp21
TU299234 other upstream 349451 10636523 ~ 10638718 (-) False sinup
TU299470 other upstream 726892 11013964 ~ 11015630 (-) False LOC113530950
trnae-uuc_4 other upstream 971971 11259043 ~ 11259114 (-) True trnae-uuc_4
trnan-guu_24 other upstream 986258 11273330 ~ 11273403 (-) True trnan-guu_24

Expression Profile