Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579744.1 |
| length | 345 |
| lncRNA type | inter_gene |
| GC content | 0.54 |
| exon number | 3 |
| gene id | LOC117599282 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047610.1 |
| NCBI id | CM018556.1 |
| chromosome length | 25111544 |
| location | 20908816 ~ 20911082 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0005524 | ATP binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU305939 | lncRNA | upstream | 1357 | 20903147 ~ 20907459 (+) | False | ubxn10 |
| TU305900 | lncRNA | upstream | 118671 | 20786242 ~ 20790145 (+) | True | G258362 |
| TU305795 | lncRNA | upstream | 152278 | 20682370 ~ 20756538 (+) | False | G258275 |
| TU305997 | lncRNA | downstream | 64816 | 20975898 ~ 20976359 (+) | True | G258439 |
| TU306029 | lncRNA | downstream | 174300 | 21085382 ~ 21088222 (+) | True | G258460 |
| TU306047 | lncRNA | downstream | 182247 | 21093329 ~ 21093844 (+) | True | G258476 |
| TU306054 | lncRNA | downstream | 192632 | 21103714 ~ 21105101 (+) | True | G258483 |
| TU306031 | lncRNA | downstream | 196265 | 21107347 ~ 21108015 (+) | True | G258462 |
| XM_034312060.1 | mRNA | upstream | 3420 | 20903105 ~ 20905396 (+) | True | ubxn10 |
| XM_026921039.2 | mRNA | upstream | 3420 | 20903107 ~ 20905396 (+) | False | ubxn10 |
| XM_026920955.2 | mRNA | upstream | 6045 | 20900122 ~ 20902771 (+) | True | cptp |
| XM_034312195.1 | mRNA | upstream | 22307 | 20883692 ~ 20886509 (+) | False | LOC113530777 |
| XM_026921092.2 | mRNA | upstream | 22307 | 20883864 ~ 20886509 (+) | True | LOC113530777 |
| XM_026920705.2 | mRNA | downstream | 8006 | 20919088 ~ 20953971 (+) | True | vwa5b1 |
| XM_034311675.1 | mRNA | downstream | 13050 | 20924132 ~ 20953971 (+) | False | vwa5b1 |
| XM_026921097.2 | mRNA | downstream | 86587 | 20997669 ~ 20999732 (+) | True | fam43b |
| XM_026920704.2 | mRNA | downstream | 141588 | 21052670 ~ 21056506 (+) | True | LOC113530567 |
| XM_034312061.1 | mRNA | downstream | 141758 | 21052840 ~ 21056506 (+) | False | LOC113530567 |
| XR_004579743.1 | other | upstream | 1566 | 20903105 ~ 20907250 (+) | False | ubxn10 |
| TU305940 | other | upstream | 3743 | 20903147 ~ 20905073 (+) | False | ubxn10 |
| XR_003403172.2 | other | upstream | 394621 | 20510244 ~ 20514195 (+) | False | LOC113530729 |
| TU305571 | other | upstream | 510102 | 20390809 ~ 20398714 (+) | True | G258096 |
| TU304946 | other | upstream | 1429921 | 19478302 ~ 19478895 (+) | True | G257622 |
| TU306101 | other | downstream | 317238 | 21228320 ~ 21230871 (+) | False | si:ch73-290k24.5 |
| TU306357 | other | downstream | 627172 | 21538254 ~ 21542254 (+) | False | LOC117599233 |
| trnal-uaa_2 | other | downstream | 1400724 | 22311806 ~ 22311888 (+) | True | trnal-uaa_2 |
| XR_004579671.1 | other | downstream | 1760543 | 22671625 ~ 22679550 (+) | False | LOC113530514 |
| TU307769 | other | downstream | 2460665 | 23371747 ~ 23383653 (+) | True | LOC117599309 |
