Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579752.1 |
| length | 945 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 2 |
| gene id | LOC117599295 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047610.1 |
| NCBI id | CM018556.1 |
| chromosome length | 25111544 |
| location | 13464191 ~ 13465215 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU300928 | lncRNA | downstream | 212838 | 13251140 ~ 13251353 (-) | False | oprl1 |
| XR_003403150.2 | lncRNA | downstream | 261560 | 13201019 ~ 13202631 (-) | True | LOC113530405 |
| TU300905 | lncRNA | downstream | 322972 | 13141011 ~ 13141219 (-) | True | G254153 |
| TU300854 | lncRNA | downstream | 494180 | 12968364 ~ 12970011 (-) | True | G254107 |
| TU300857 | lncRNA | downstream | 531052 | 12932725 ~ 12933139 (-) | True | G254110 |
| TU301365 | lncRNA | upstream | 125285 | 13590500 ~ 13590970 (-) | True | G254568 |
| TU301384 | lncRNA | upstream | 149213 | 13614428 ~ 13614663 (-) | True | G254587 |
| TU301397 | lncRNA | upstream | 199678 | 13664893 ~ 13665473 (-) | True | G254599 |
| TU301398 | lncRNA | upstream | 227582 | 13692797 ~ 13696620 (-) | True | G254600 |
| TU301364 | lncRNA | upstream | 234794 | 13700009 ~ 13700405 (-) | True | G254567 |
| XM_026921347.2 | mRNA | downstream | 12817 | 13440784 ~ 13451374 (-) | True | tcea2 |
| XM_026920113.2 | mRNA | downstream | 180306 | 13251333 ~ 13283885 (-) | True | oprl1 |
| XM_034311548.1 | mRNA | downstream | 206465 | 13251332 ~ 13257726 (-) | False | oprl1 |
| XM_034312111.1 | mRNA | downstream | 435304 | 12995420 ~ 13028887 (-) | False | myt1b |
| XM_026920173.2 | mRNA | upstream | 160683 | 13625898 ~ 13632021 (-) | False | sla2 |
| XM_026920172.2 | mRNA | upstream | 160683 | 13625898 ~ 13632021 (-) | True | sla2 |
| XM_026920609.2 | mRNA | upstream | 170597 | 13635812 ~ 13699042 (-) | False | ndrg3b |
| XM_026920605.2 | mRNA | upstream | 170597 | 13635812 ~ 13699042 (-) | False | ndrg3b |
| XM_026920607.2 | mRNA | upstream | 170597 | 13635812 ~ 13699042 (-) | False | ndrg3b |
| TU300417 | other | downstream | 1304831 | 12158772 ~ 12159360 (-) | False | ptk6b |
| trnae-cuc_33 | other | downstream | 1323018 | 12141102 ~ 12141173 (-) | True | trnae-cuc_33 |
| XR_003403207.1 | other | downstream | 1571189 | 11892927 ~ 11893002 (-) | True | LOC113530993 |
| XR_003403206.1 | other | downstream | 1571771 | 11892348 ~ 11892420 (-) | True | LOC113530992 |
| TU300077 | other | downstream | 1895661 | 11556887 ~ 11568530 (-) | False | avpr2ab |
| XR_004579685.1 | other | upstream | 664001 | 14129216 ~ 14150581 (-) | False | LOC113530423 |
| XR_004579686.1 | other | upstream | 664001 | 14129216 ~ 14150581 (-) | False | LOC113530423 |
| XR_004579684.1 | other | upstream | 664001 | 14129216 ~ 14150581 (-) | True | LOC113530423 |
| XR_004579687.1 | other | upstream | 664001 | 14129216 ~ 14146831 (-) | False | LOC113530423 |
| TU301948 | other | upstream | 1234057 | 14699272 ~ 14704270 (-) | False | G255071 |
