RNA id: XR_004579759.1


Basic Information

Item Value
RNA id XR_004579759.1
length 485
lncRNA type inter_gene
GC content 0.53
exon number 3
gene id LOC117599308
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24735723 ~ 24736373 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTGAGACCGGTGTGAACAGGTGAGATAGTTGAGTTGTGGAggggtgagacaggtgagaccGGTGTGAACAGGTGAGATAGTTGAGTTGTGCAggggtgagacaggtgagaccGGTGTGAACAGGTGAGATAGTTGAGTTGTGGAggggtgagacaggtgagaccGGTGTGAACAGGTGAGATAGTTGAGTTGTGCAggggtgagacaggtgagaccGGTGTGAACAGGTGAGATAGATGAGTTGTGCAggggtgagacaggtgagaccGGTGTGAACAGGTGAGATAGTTGAGTTGTGCAggggtgagacaggtgagaccGGTGTGAACAGGTGAGATAGTTGAGTTGTGCAggggtgagacaggtgagaccCGTATGGACAGGTGAGATAGTTGAGTTGAGACAGGTCAAGTCTGGGCAGGTGAGACAGGTGGGACACATTAGCATTACGTTAAGCAGCAGTAAGGTGTTGCGTACGTTTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308703 lncRNA upstream 7326 24725847 ~ 24728397 (+) True G260691
TU308704 lncRNA upstream 7326 24725847 ~ 24728397 (+) False G260691
XR_003403185.2 lncRNA upstream 29608 24705287 ~ 24706115 (+) True LOC113530849
TU308681 lncRNA upstream 118506 24616168 ~ 24617217 (+) True G260677
TU308715 lncRNA downstream 9408 24745781 ~ 24751808 (+) False G260697
TU308717 lncRNA downstream 9408 24745781 ~ 24751808 (+) True G260697
TU308718 lncRNA downstream 9408 24745781 ~ 24751808 (+) False G260697
TU308664 lncRNA downstream 32549 24768922 ~ 24771134 (+) True G260664
TU308726 lncRNA downstream 38142 24774515 ~ 24775224 (+) True G260705
XM_026921435.2 mRNA upstream 10488 24715017 ~ 24725235 (+) True sgms2b
XM_034312246.1 mRNA upstream 10488 24715029 ~ 24725235 (+) False sgms2b
XM_026920324.2 mRNA upstream 37290 24693127 ~ 24698433 (+) False aimp1b
XM_034312221.1 mRNA downstream 60856 24797229 ~ 24801608 (+) True LOC117599303
XM_034312222.1 mRNA downstream 65519 24801892 ~ 24802529 (+) True LOC117599304
XM_034312223.1 mRNA downstream 66798 24803171 ~ 24804413 (+) True LOC117599305
XM_034311726.1 mRNA downstream 71144 24807517 ~ 24826683 (+) False zgc:158659
XM_034311724.1 mRNA downstream 73468 24809841 ~ 24826683 (+) False zgc:158659
XR_004579660.1 other upstream 101178 24624937 ~ 24634545 (+) False ddx58
TU308384 other upstream 466456 24268577 ~ 24269267 (+) True G260483
TU308306 other upstream 702999 24032227 ~ 24032724 (+) True G260415
TU307780 other upstream 1346409 23387538 ~ 23389314 (+) True G259993
TU307771 other upstream 1352070 23371747 ~ 23383653 (+) False LOC117599309

Expression Profile