RNA id: trnan-guu_24


Basic Information

Item Value
RNA id trnan-guu_24
length 74
RNA type tRNA
GC content 0.61
exon number 1
gene id trnan-guu_24
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11273330 ~ 11273403 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCTCTGTGGCGCAATCGGTTAGCGCGTTCGGCTGTTAACCGAAAGGTTGGTGGTTCGAGCCCACCCAGGGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299705 lncRNA downstream 8181 11264909 ~ 11265149 (-) True G253174
TU299539 lncRNA downstream 181995 11089077 ~ 11091335 (-) False LOC113530615
XR_003403161.2 lncRNA downstream 182044 11089065 ~ 11091286 (-) False LOC113530615
TU299537 lncRNA downstream 182647 11089077 ~ 11090683 (-) True LOC113530615
XR_003403192.2 lncRNA downstream 234362 11037822 ~ 11038968 (-) True LOC113530895
TU299971 lncRNA upstream 80099 11353502 ~ 11354217 (-) True G253383
TU299973 lncRNA upstream 86112 11359515 ~ 11361585 (-) True G253385
TU299972 lncRNA upstream 89569 11362972 ~ 11364414 (-) True G253384
XR_003403134.2 lncRNA upstream 182617 11456020 ~ 11462531 (-) False LOC113530309
XR_003403133.2 lncRNA upstream 182617 11456020 ~ 11462531 (-) False LOC113530309
XM_034311610.1 mRNA downstream 14643 11256064 ~ 11258687 (-) True ccdc115
XM_026920565.2 mRNA downstream 18724 11247652 ~ 11254606 (-) True si:dkey-109j17.5
XM_034311770.1 mRNA downstream 19787 11247652 ~ 11253543 (-) False si:dkey-109j17.5
XM_034311771.1 mRNA downstream 19788 11247652 ~ 11253542 (-) False si:dkey-109j17.5
XM_026920567.2 mRNA downstream 31026 11238252 ~ 11242304 (-) True apobec2b
XM_026920309.2 mRNA upstream 687 11274090 ~ 11277676 (-) False fkbpl
XM_026920307.2 mRNA upstream 687 11274090 ~ 11277121 (-) False fkbpl
XM_026920306.2 mRNA upstream 687 11274090 ~ 11277119 (-) True fkbpl
XM_026920308.2 mRNA upstream 687 11274090 ~ 11277117 (-) False fkbpl
XM_034311599.1 mRNA upstream 687 11274090 ~ 11277117 (-) False fkbpl
trnae-uuc_4 other downstream 14216 11259043 ~ 11259114 (-) True trnae-uuc_4
TU299470 other downstream 257700 11013964 ~ 11015630 (-) False LOC113530950
TU299234 other downstream 634612 10636523 ~ 10638718 (-) False sinup
XR_003403171.2 other downstream 803796 10460694 ~ 10469534 (-) False usp21
TU298725 other downstream 1243337 10029492 ~ 10029993 (-) True G252373
TU299993 other upstream 182618 11456021 ~ 11462706 (-) False LOC113530309
TU299994 other upstream 182618 11456021 ~ 11462706 (-) True LOC113530309
TU300077 other upstream 283484 11556887 ~ 11568530 (-) False avpr2ab
XR_003403206.1 other upstream 618945 11892348 ~ 11892420 (-) True LOC113530992
XR_003403207.1 other upstream 619524 11892927 ~ 11893002 (-) True LOC113530993

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) trnan-guu-373 True 74 mRNA 0.55 1 NW_023493931.1 54427 ~ 54500 (+)
eurasian perch (Perca fluviatilis) unassigned_transcript_705 True 74 tRNA 0.61 1 NC_053125.1 18698858 ~ 18698931 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_2619 True 74 tRNA 0.61 1 NC_056721.1 11513773 ~ 11513846 (+)
tiger barb (Puntius tetrazona) unassigned_transcript_705 True 73 tRNA 0.55 2 NC_056702.1 26276847 ~ 26276933 (-)
mexican tetra (Astyanax mexicanus) trnan-guu_57 True 74 tRNA 0.61 1 NW_019172455.1 59621 ~ 59694 (+)