RNA id: TU309170


Basic Information

Item Value
RNA id TU309170
length 1526
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id LOC117599401
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 52397 ~ 54649 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AtgaatctttattttattagagGTTAATTAGTAAACAGTAAGTGtgaacatatttaataaatgttaatgtggAGTCATGGAAAACTTTACAGACTGCAGCTGGTCCAGGCATTTTCTTTACACACTttcagtgtacacacacaaacacacaactgaattctgcagtaaaacctctgatataaaaataaaaatagcattgTAATAATGAAAATAGTCAAATACTAAATAACATTGaacagagggagtgtgtgtgtgagagagagagagagagagagagagagagtgggtttTGGtcagaacagaaacagaagaaaaaacacagtgtatttaataataaactgtaataatctGTAATTCCCAGCTGTTTATTACAAGCAGTGAATCAGATTAAAATAATGctaatactaatgctaataattattaatcagAGTAAAGTGTGCAGGGAAACGAACACATGCAGCTCTGACCTCTAACCCTGACACATGGCTCACCACAGTGAGGGGTTTTACACTGAAGGTTAGGGTGGAGTGCGCAGGGCTTAGGGTTTTACACTGAAGGTTAGGGTGGAGTGCGCAGGGTTTAGGGTTTTACACTGAAGGTTAGGGTGGAGTGCGCAGGGTTTAGGGTTTTACACTGAAGGTTAGGGTGGAGTGCGCAGGGTTTAGGGTTTTACACTGAAGGTTAGGGTGGAGTGCGTAGGGTTTAGGGCTCTACACTGAAGGTTAGGGTGGAGTGCGCAGGGTTTAGGGTTTTACACTGAAGGTTAGGGTGGAGTGCATAGGGCTTAGGGGTTAGTAGTTAGGGCTTAGTGTTTAGTGATTAAGGTTTAGATCTTAGTGATTAGTGCTTTAGGGCTTAGGTTTTAGCATTTTAGGTTTTAGCGATCAGTGGTTTAGGGTTTAGTGTTTAAAGTttagtgtttagggtttagggtttagtgtttagggtttagtgtttagggtttagtgtTTAGGGCTTAGGGATTTAGTCAGATTGAAGTTCTGAGCTTTACTGAGCACGTTTGGATGGAGGAACCAGGTGGGCAGGCAGCTCTGCAGGTAACTCATGACCTTCAAGCTTCACCTTGATCAGGTGATTAGCTAAGGCAAACTCCTCGTCATCAAGGAAACCGTCCCGGTCAACGTCGGCGAGTTTCCAGATTTTTCCGAGCACGGTGTTGGGCAATTTGGACTTGACCATCTCACGCTTGGCCATGGCGCCGGACACTTTGCCATTGACGGGCGACAGAGTGTAGAAGATCTCATCATACGTGTGCTTGTCTTTCTGCACCACCCACTCCAGTTCATCAATGCCCTCAGACACACCCTCTCCATAACCACCACCAAAAGGCCCAACTGACACTCCCTCGAAGGCCCCGCCCTGCACTGCAGCGGTGGGCGTGGCCAACTCCTCCTGCCGCACCAGCGTCATGAGTTTTGCTATATCGTTCTCGAGCAGGTCATCTACACTCTCCAGTAGCTTAGGCTTGAGAGCCTGGAACTTAGTGAAGTCCTGAGACACCAgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309146 lncRNA upstream 36506 15412 ~ 15891 (+) True G260984
TU309145 lncRNA upstream 36569 15412 ~ 15828 (+) False G260984
TU309189 lncRNA downstream 56328 110977 ~ 112632 (+) True G261008
TU309206 lncRNA downstream 74491 129140 ~ 133142 (+) True G261018
TU309210 lncRNA downstream 76907 131556 ~ 132272 (+) True G261022
TU309208 lncRNA downstream 77908 132557 ~ 137612 (+) True G261020
TU309212 lncRNA downstream 80770 135419 ~ 135936 (+) True G261024
XM_026912073.2 mRNA downstream 9130 63779 ~ 66290 (+) True mrpl49
XM_026912069.2 mRNA downstream 11939 66588 ~ 69388 (+) True znhit2
XM_034312776.1 mRNA downstream 43040 97689 ~ 104789 (+) True wdr74
XM_034312780.1 mRNA downstream 171715 226364 ~ 245418 (+) True LOC113538163
XM_034312333.1 mRNA downstream 200297 254946 ~ 266773 (+) False fgf13b
TU309200 other downstream 43099 97748 ~ 102029 (+) False wdr74
TU309275 other downstream 201977 256626 ~ 266760 (+) True fgf13b
XR_004579859.1 other downstream 256827 311476 ~ 311986 (+) True LOC117599405
TU309343 other downstream 390118 444767 ~ 480711 (+) True G261104
TU309389 other downstream 427786 482435 ~ 486200 (+) False prdm15

Expression Profile