RNA id: TU309206


Basic Information

Item Value
RNA id TU309206
length 1790
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G261018
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 129140 ~ 133142 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGATAAAAGTCATGAAATTATTAAAGTGTAACAGTTataatgctgtatttggttAGATTAGATTACAATCACTAGCATTagtagtgcatttttttttcaaggtcacagaaattgaagaaaaaaacccaaaacaacaaataaaaataaacaaaaaaatccattgtAGATAAAAGTTTGAATGATGAACATTCCATCCAGTTTAATTTCTTTAACTGGAACATTCAGAGATATATAAAGCTtcattttacacatacacacagagcgtCGATACAAAAGCAGGTTATATTGGTCACGACAGCCTCAGTCTTTAAATTAGAACATGATAAAGATATTTACAATGTCATATAAAAGTCCTGCTAGCATGATTAGCATAGTCAGGCTTTCAGCAGTGAAGCGTCCTGTGTAAAACTGTCCGAGTGTCATGTTGAGTGTTCTGAACGCTTCACAGTCCACAGTGTgagtgttaaattaacaccaGTGTGACAGGTTCAGACTGTTCTGTCTCAGTCAGAAAGCACACAAACTCTTTAGCTAAAAGTTCCACACTCAGGTCACTTGGATGACGAAACAGATAACGAGAATTAGCCTTAACGAGGCCTAACAAGGCTTAAAGAGGTTTAACAAGGCCAAGTGTAAACATTTCTTATTTAAAGTGTACATTCTGCAATAATTACACCAGCACGTGAGACTCAGTATGTGTGCaggaaatgaaatatatattatatatatattctttaacagaaaacagacaaatccttctttatttcttttttttttttttttggaatgaacTGAAAGGTAAAGGTCTATGGTTACGTCTCAaattacacactgctgcactaGAGACAGTCAGAACAGCCTCCTATTTCACACAATATCTAATACAATTTCTACAAAGTGCAGCAGTGTGCGGTTTGGAACATAACGTAATATTGAAGACTTACAAGATTATACcctacaaaacaaacaaacaaacaaacaaaacaacaacaaaaaaaacgcaCCTCATCCTAAATTTCGGGCGGTGCACATTTAGTTTACTAAAGCATTCTGGGACACTTCCCATTTCTTAgatgattattatattaaacTAACACATATTTgtccatttgtgtgtgtgagagaaaaacatAATTATTCCGTGTTGTGTTGATACAAACTTTTTCCAACAAACGTATGATTAGAAGAGAGTGAAACTGTTCTTTACAAAGTGGTTCCACGATTTGTCACTATTTAGTAAGAACTATGGAGATTTGAGACACAGACGATTTACTAGAAGACTCTATTAAACATGCAGTTTGGGACGCAGCCTCTATCGGGCCAGAGTTTATTTAGAGATTATTAGAGATTATCAGACTAAAATGTAGCTCAGTgaagcagcagtgtgttgtgatgagtggataataaacgtgttggtgtgtgatgagtggataataaacgtgttggtgtgatgagtggatgttggtgtgtgatgagtggataataaacgtgttggtgtgtgatgagtggataataaacacgtgttggtgtgtgatgagtggataataaacgtgttggtgtgtgatgagtggataataaacgcgtgttggtgtgtgatgagtggataataaacgtgttggtgtgtgatgagtggataataaacgtgttggtgtgtgatgagtggataataaacgtgttggtgtgtgatgagtggataataaacgtgttggtgtgatgagtggataataaacgtgttggtgtgatgagtggataataaacacgtgttggtgtgtgatgagtggataataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309189 lncRNA upstream 16508 110977 ~ 112632 (+) True G261008
TU309170 lncRNA upstream 74491 52397 ~ 54649 (+) False LOC117599401
TU309212 lncRNA downstream 2277 135419 ~ 135936 (+) True G261024
TU309222 lncRNA downstream 6148 139290 ~ 141543 (+) True G261031
TU309225 lncRNA downstream 11259 144401 ~ 144867 (+) True G261034
TU309249 lncRNA downstream 46598 179740 ~ 278637 (+) True G261044
TU309255 lncRNA downstream 50844 183986 ~ 184469 (+) True G261048
XM_034312776.1 mRNA upstream 24351 97689 ~ 104789 (+) True wdr74
XM_026912069.2 mRNA upstream 59752 66588 ~ 69388 (+) True znhit2
XM_026912073.2 mRNA upstream 62850 63779 ~ 66290 (+) True mrpl49
XM_034312780.1 mRNA downstream 93222 226364 ~ 245418 (+) True LOC113538163
XM_034312333.1 mRNA downstream 121804 254946 ~ 266773 (+) False fgf13b
XM_026933139.2 mRNA downstream 121804 254946 ~ 266082 (+) False fgf13b
XM_026933041.2 mRNA downstream 208529 341671 ~ 351928 (+) True il2rga
XM_034312540.1 mRNA downstream 295007 428149 ~ 436298 (+) True ska2
TU309200 other upstream 27111 97748 ~ 102029 (+) False wdr74
TU309275 other downstream 123484 256626 ~ 266760 (+) True fgf13b
XR_004579859.1 other downstream 178334 311476 ~ 311986 (+) True LOC117599405
TU309343 other downstream 311625 444767 ~ 480711 (+) True G261104
TU309389 other downstream 349293 482435 ~ 486200 (+) False prdm15
TU309320 other downstream 374355 507497 ~ 512773 (+) False bcl7ba

Expression Profile