RNA id: TU309277



Basic Information


Item Value
RNA id TU309277
length 612
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G261067
representative True

Chromosome Information


Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 308084 ~ 308719 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


TCTCCTTTATTCACTCTCTTCACAGAGATACACATCAGTTACAGTCTCAAGGTAAATGTGTTTGTGGAATTAATATGGTCTGTGCAGTAAGGCTGAAAGCATAGttagcattattttttaaacacacacacacacgtcagtCTCAGTGCACATGAAGCATGAAGTGATTTTAATGAAGTGGTGagtaatatatgtatatatatcttaGTGCCTGAGACTCTGCAGTGAAgctcacacacgtacacacacgcacacacacacacacacacacacacacacagatgaacatTTAGAAGTAACATCTTCAGCGACACTCAGCGGAATGATATCATATGAGATGAAGTGCAGCGGTAGCTAACGATCCTGCGAGCTGCTCCTGCAGTCAGACACTCTGAGCTAAATGAACGTTGCGAAATCATCTTACATGTGGTTAAGGAATTTCTCGCTTTTTTGTGTCTCTACAGTTTTTTGGCGCAGTCGGTGCAGTAGATGTTTCCATCCTTGGAGATGAAGCGTTTCTCGGCGAGGTTCGCGGAACACTTCTTGCAGGTGAAGCAGTAATCGTGCCACGTTCCTCCCTCGTAGTTCACCACATTAGTGGCTTTTCCAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU309278 lncRNA upstream 21017 285248 ~ 287067 (+) False G261068
TU309249 lncRNA upstream 29447 179740 ~ 278637 (+) True G261044
TU309264 lncRNA upstream 54643 195667 ~ 253441 (+) True G261056
TU309272 lncRNA upstream 85322 221220 ~ 222762 (+) True G261064
TU309255 lncRNA upstream 123615 183986 ~ 184469 (+) True G261048
TU309305 lncRNA downstream 18543 327262 ~ 327468 (+) True G261090
TU309311 lncRNA downstream 70301 379020 ~ 436288 (+) False ska2
TU309317 lncRNA downstream 109970 418689 ~ 422040 (+) True G261099
TU309346 lncRNA downstream 114152 422871 ~ 423758 (+) True G261106
TU309384 lncRNA downstream 125624 434343 ~ 578767 (+) True G261140
XM_034312333.1 mRNA upstream 41311 254946 ~ 266773 (+) False fgf13b
XM_026933139.2 mRNA upstream 42002 254946 ~ 266082 (+) False fgf13b
XM_034312780.1 mRNA upstream 62666 226364 ~ 245418 (+) True LOC113538163
XM_034312776.1 mRNA upstream 203295 97689 ~ 104789 (+) True wdr74
XM_026912069.2 mRNA upstream 238696 66588 ~ 69388 (+) True znhit2
XM_026933041.2 mRNA downstream 32952 341671 ~ 351928 (+) True il2rga
XM_034312540.1 mRNA downstream 119430 428149 ~ 436298 (+) True ska2
XM_034312541.1 mRNA downstream 151543 460262 ~ 476591 (+) True LOC113523717
XM_034312781.1 mRNA downstream 173669 482388 ~ 500186 (+) True prdm15
XM_034312901.1 mRNA downstream 192503 501222 ~ 507099 (+) True tbl2
TU309275 other upstream 41324 256626 ~ 266760 (+) True fgf13b
TU309200 other upstream 206055 97748 ~ 102029 (+) False wdr74
XR_004579859.1 other downstream 2757 311476 ~ 311986 (+) True LOC117599405
TU309343 other downstream 136048 444767 ~ 480711 (+) True G261104
TU309389 other downstream 173716 482435 ~ 486200 (+) False prdm15
TU309320 other downstream 198778 507497 ~ 512773 (+) False bcl7ba
TU309447 other downstream 417108 725827 ~ 727725 (+) True G261178

Expression Profile