Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU309279 |
| length | 1083 |
| lncRNA type | inter_gene |
| GC content | 0.49 |
| exon number | 3 |
| gene id | G261068 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 285248 ~ 310549 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU309249 | lncRNA | upstream | 6611 | 179740 ~ 278637 (+) | True | G261044 |
| TU309264 | lncRNA | upstream | 31807 | 195667 ~ 253441 (+) | True | G261056 |
| TU309272 | lncRNA | upstream | 62486 | 221220 ~ 222762 (+) | True | G261064 |
| TU309255 | lncRNA | upstream | 100779 | 183986 ~ 184469 (+) | True | G261048 |
| TU309225 | lncRNA | upstream | 140381 | 144401 ~ 144867 (+) | True | G261034 |
| TU309305 | lncRNA | downstream | 16713 | 327262 ~ 327468 (+) | True | G261090 |
| TU309311 | lncRNA | downstream | 68471 | 379020 ~ 436288 (+) | False | ska2 |
| TU309317 | lncRNA | downstream | 108140 | 418689 ~ 422040 (+) | True | G261099 |
| TU309346 | lncRNA | downstream | 112322 | 422871 ~ 423758 (+) | True | G261106 |
| TU309384 | lncRNA | downstream | 123794 | 434343 ~ 578767 (+) | True | G261140 |
| XM_034312333.1 | mRNA | upstream | 18475 | 254946 ~ 266773 (+) | False | fgf13b |
| XM_026933139.2 | mRNA | upstream | 19166 | 254946 ~ 266082 (+) | False | fgf13b |
| XM_034312780.1 | mRNA | upstream | 39830 | 226364 ~ 245418 (+) | True | LOC113538163 |
| XM_034312776.1 | mRNA | upstream | 180459 | 97689 ~ 104789 (+) | True | wdr74 |
| XM_026912069.2 | mRNA | upstream | 215860 | 66588 ~ 69388 (+) | True | znhit2 |
| XM_026933041.2 | mRNA | downstream | 31122 | 341671 ~ 351928 (+) | True | il2rga |
| XM_034312540.1 | mRNA | downstream | 117600 | 428149 ~ 436298 (+) | True | ska2 |
| XM_034312541.1 | mRNA | downstream | 149713 | 460262 ~ 476591 (+) | True | LOC113523717 |
| XM_034312781.1 | mRNA | downstream | 171839 | 482388 ~ 500186 (+) | True | prdm15 |
| XM_034312901.1 | mRNA | downstream | 190673 | 501222 ~ 507099 (+) | True | tbl2 |
| TU309275 | other | upstream | 18488 | 256626 ~ 266760 (+) | True | fgf13b |
| TU309200 | other | upstream | 183219 | 97748 ~ 102029 (+) | False | wdr74 |
| XR_004579859.1 | other | downstream | 927 | 311476 ~ 311986 (+) | True | LOC117599405 |
| TU309343 | other | downstream | 134218 | 444767 ~ 480711 (+) | True | G261104 |
| TU309389 | other | downstream | 171886 | 482435 ~ 486200 (+) | False | prdm15 |
| TU309320 | other | downstream | 196948 | 507497 ~ 512773 (+) | False | bcl7ba |
| TU309447 | other | downstream | 415278 | 725827 ~ 727725 (+) | True | G261178 |
