RNA id: TU309322


Basic Information

Item Value
RNA id TU309322
length 528
lncRNA type sense_over
GC content 0.38
exon number 3
gene id G261101
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 517324 ~ 615120 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTACAGCACGACATTTattcagaagtgtgtgtatgaaaagtgatgatgatgatgatgatgatgatcgcTAAATACacaatgaaaagtaaaaaaaaaagtaaatacatgatctattattcattttgttttctgttctgatgtttattttacaagaATTCTTTATTCCTTCTGAGCTTaaatccatttttctttcttttaagagTCTCAGTCTGTGTCTTTCACACACTCCCCACTGAAGATATCTTTAATCAAGCGTATTCTCATGCGTTATTAAGAAATGACAGAttataatgtgtatttttaacTCTTTATTGACAAAGGGAGGGGAAAACACGTATAAACAGGTACAAACGCGGCCGACGTGACCTTCACTCCTGCTCCTTGTCCTCTCCGTGAGTGATGACGTAGCACAGGTTTTTGTAGTCCAGGTTTCCAGCAACGTCCAGCGGGAAGTTTGTGAACATCTGATTTACCTGAAAGTGTCACAAACGGAGGTGTGAGGAGCACTTTCACTCCgcgcattaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309344 lncRNA upstream 170 515729 ~ 517154 (+) False bcl7ba
TU309311 lncRNA upstream 81036 379020 ~ 436288 (+) False ska2
TU309346 lncRNA upstream 93566 422871 ~ 423758 (+) True G261106
TU309317 lncRNA upstream 95284 418689 ~ 422040 (+) True G261099
TU309305 lncRNA upstream 189856 327262 ~ 327468 (+) True G261090
TU309405 lncRNA downstream 42285 657405 ~ 670966 (+) False LOC117599335
XR_004579793.1 lncRNA downstream 47892 663012 ~ 684364 (+) True LOC117599335
TU309434 lncRNA downstream 90423 705543 ~ 706282 (+) True G261173
TU309437 lncRNA downstream 96304 711424 ~ 713068 (+) True G261176
TU309468 lncRNA downstream 156138 771258 ~ 773261 (+) True G261190
XM_034312782.1 mRNA upstream 114 507279 ~ 517210 (+) True bcl7ba
XM_034312901.1 mRNA upstream 10225 501222 ~ 507099 (+) True tbl2
XM_034312781.1 mRNA upstream 17138 482388 ~ 500186 (+) True prdm15
XM_034312541.1 mRNA upstream 40733 460262 ~ 476591 (+) True LOC113523717
XM_034312540.1 mRNA upstream 81026 428149 ~ 436298 (+) True ska2
XM_026910326.2 mRNA downstream 710 615830 ~ 621347 (+) True kctd7
XM_034312453.1 mRNA downstream 8266 623386 ~ 636006 (+) True rabgef1
XM_034312455.1 mRNA downstream 8266 623386 ~ 633969 (+) False rabgef1
XM_034312454.1 mRNA downstream 9766 624886 ~ 633972 (+) False rabgef1
XM_034312456.1 mRNA downstream 14891 630011 ~ 633973 (+) False rabgef1
TU309320 other upstream 4551 507497 ~ 512773 (+) False bcl7ba
TU309389 other upstream 31124 482435 ~ 486200 (+) False prdm15
TU309343 other upstream 36613 444767 ~ 480711 (+) True G261104
XR_004579859.1 other upstream 205338 311476 ~ 311986 (+) True LOC117599405
TU309275 other upstream 250564 256626 ~ 266760 (+) True fgf13b
TU309447 other downstream 110707 725827 ~ 727725 (+) True G261178
trnal-uag_7 other downstream 479731 1094851 ~ 1094932 (+) True trnal-uag_7
trnal-aag_10 other downstream 484252 1099372 ~ 1099453 (+) True trnal-aag_10
TU309774 other downstream 486669 1101789 ~ 1112278 (+) True vamp2
TU309863 other downstream 590871 1205991 ~ 1237132 (+) True G261503

Expression Profile