RNA id: TU309324


Basic Information

Item Value
RNA id TU309324
length 596
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G261101
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 517324 ~ 615120 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTACAGCACGACATTTattcagaagtgtgtgtatgaaaagtgatgatgatgatgatgatgatgatcgcTAAATACacaatgaaaagtaaaaaaaatctattattcattttgttttctgttctgatgtttattttacaagaATTCTTTATTCCTTCTGAGCTTaaatccatttttctttcttttaagagTCTCAGTCTGTGTCTTTCACACACTCCCCACTGAAGATATCTTTAATCAAGCGTATTCTCATGCGTTATTAAGAAATGACAGAttataatgtgtatttttaacTCTTTATTGACAAAGGGAGGGGAAAACACGTATAAACAGGTACAAACGCGGCCGACGTGACCTTCACTCCTGCTCCTTGTCCTCTCCGTGAGTGATGACGTAGCACAGGTTTTTGTAGTCCAGGTTTCCAGCAACGTCCAGCGGGAAGTTTGTGAACATCTGATTACCTCTGCCTCTGTGAATTTGTCTGCCTGGGACATGAGATGGTATTTGAtcctgaaatgtgaaaataaacagatttcagatgtttgatgtgtaaCTGAACAAAAACATTTGCAATTCAAAGCAGAAACAATGTGatgaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309344 lncRNA upstream 170 515729 ~ 517154 (+) False bcl7ba
TU309311 lncRNA upstream 81036 379020 ~ 436288 (+) False ska2
TU309346 lncRNA upstream 93566 422871 ~ 423758 (+) True G261106
TU309317 lncRNA upstream 95284 418689 ~ 422040 (+) True G261099
TU309305 lncRNA upstream 189856 327262 ~ 327468 (+) True G261090
TU309411 lncRNA downstream 33548 603726 ~ 656209 (+) False trim37
TU309405 lncRNA downstream 87227 657405 ~ 670966 (+) False LOC117599335
XR_004579793.1 lncRNA downstream 92834 663012 ~ 684364 (+) True LOC117599335
TU309434 lncRNA downstream 135365 705543 ~ 706282 (+) True G261173
TU309437 lncRNA downstream 141246 711424 ~ 713068 (+) True G261176
XM_034312782.1 mRNA upstream 114 507279 ~ 517210 (+) True bcl7ba
XM_034312901.1 mRNA upstream 10225 501222 ~ 507099 (+) True tbl2
XM_034312781.1 mRNA upstream 17138 482388 ~ 500186 (+) True prdm15
XM_034312541.1 mRNA upstream 40733 460262 ~ 476591 (+) True LOC113523717
XM_034312540.1 mRNA upstream 81026 428149 ~ 436298 (+) True ska2
XM_034312547.1 mRNA downstream 5905 576083 ~ 612550 (+) True cux1a
XM_034312548.1 mRNA downstream 5905 576083 ~ 612550 (+) False cux1a
XM_034312550.1 mRNA downstream 5905 576083 ~ 605314 (+) False cux1a
XM_034312549.1 mRNA downstream 6321 576499 ~ 612550 (+) False cux1a
XM_026910326.2 mRNA downstream 45652 615830 ~ 621347 (+) True kctd7
TU309320 other upstream 4551 507497 ~ 512773 (+) False bcl7ba
TU309389 other upstream 31124 482435 ~ 486200 (+) False prdm15
TU309343 other upstream 36613 444767 ~ 480711 (+) True G261104
XR_004579859.1 other upstream 205338 311476 ~ 311986 (+) True LOC117599405
TU309275 other upstream 250564 256626 ~ 266760 (+) True fgf13b
TU309447 other downstream 155649 725827 ~ 727725 (+) True G261178
trnal-uag_7 other downstream 524673 1094851 ~ 1094932 (+) True trnal-uag_7
trnal-aag_10 other downstream 529194 1099372 ~ 1099453 (+) True trnal-aag_10
TU309774 other downstream 531611 1101789 ~ 1112278 (+) True vamp2
TU309863 other downstream 635813 1205991 ~ 1237132 (+) True G261503

Expression Profile