Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU309411 |
| length | 1143 |
| lncRNA type | read_through |
| GC content | 0.38 |
| exon number | 2 |
| gene id | trim37 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 603726 ~ 656209 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU309384 | lncRNA | upstream | 24959 | 434343 ~ 578767 (+) | True | G261140 |
| TU309324 | lncRNA | upstream | 33548 | 517324 ~ 570178 (+) | False | G261101 |
| TU309345 | lncRNA | upstream | 34543 | 515729 ~ 569183 (+) | False | bcl7ba |
| TU309344 | lncRNA | upstream | 86572 | 515729 ~ 517154 (+) | False | bcl7ba |
| TU309311 | lncRNA | upstream | 167438 | 379020 ~ 436288 (+) | False | ska2 |
| TU309405 | lncRNA | downstream | 1196 | 657405 ~ 670966 (+) | False | LOC117599335 |
| XR_004579793.1 | lncRNA | downstream | 6803 | 663012 ~ 684364 (+) | True | LOC117599335 |
| TU309434 | lncRNA | downstream | 49334 | 705543 ~ 706282 (+) | True | G261173 |
| TU309437 | lncRNA | downstream | 55215 | 711424 ~ 713068 (+) | True | G261176 |
| TU309468 | lncRNA | downstream | 115049 | 771258 ~ 773261 (+) | True | G261190 |
| XM_034312782.1 | mRNA | upstream | 86516 | 507279 ~ 517210 (+) | True | bcl7ba |
| XM_034312901.1 | mRNA | upstream | 96627 | 501222 ~ 507099 (+) | True | tbl2 |
| XM_034312781.1 | mRNA | upstream | 103540 | 482388 ~ 500186 (+) | True | prdm15 |
| XM_034312541.1 | mRNA | upstream | 127135 | 460262 ~ 476591 (+) | True | LOC113523717 |
| XM_034312540.1 | mRNA | upstream | 167428 | 428149 ~ 436298 (+) | True | ska2 |
| XM_026910347.2 | mRNA | downstream | 59996 | 716205 ~ 719326 (+) | True | atg101 |
| XM_026910340.2 | mRNA | downstream | 73809 | 730018 ~ 743991 (+) | True | umodl1 |
| XM_026910342.2 | mRNA | downstream | 73809 | 730018 ~ 743991 (+) | False | umodl1 |
| XM_034312870.1 | mRNA | downstream | 106868 | 763077 ~ 775278 (+) | True | mogat2 |
| XM_034312867.1 | mRNA | downstream | 125314 | 781523 ~ 794093 (+) | True | dgat2 |
| TU309320 | other | upstream | 90953 | 507497 ~ 512773 (+) | False | bcl7ba |
| TU309389 | other | upstream | 117526 | 482435 ~ 486200 (+) | False | prdm15 |
| TU309343 | other | upstream | 123015 | 444767 ~ 480711 (+) | True | G261104 |
| XR_004579859.1 | other | upstream | 291740 | 311476 ~ 311986 (+) | True | LOC117599405 |
| TU309275 | other | upstream | 336966 | 256626 ~ 266760 (+) | True | fgf13b |
| TU309447 | other | downstream | 69618 | 725827 ~ 727725 (+) | True | G261178 |
| trnal-uag_7 | other | downstream | 438642 | 1094851 ~ 1094932 (+) | True | trnal-uag_7 |
| trnal-aag_10 | other | downstream | 443163 | 1099372 ~ 1099453 (+) | True | trnal-aag_10 |
| TU309774 | other | downstream | 445580 | 1101789 ~ 1112278 (+) | True | vamp2 |
| TU309863 | other | downstream | 549782 | 1205991 ~ 1237132 (+) | True | G261503 |
