RNA id: XM_034312450.1


Basic Information

Item Value
RNA id XM_034312450.1
length 4829
RNA type mRNA
GC content 0.52
exon number 26
gene id trim37
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 603726 ~ 656209 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCTGCGATTGGTTGAATCGGTTTCCCATGGCGACATACATTGACAGCGCGAGCCGCATTTGGacgctatgtttttttttggacgcttagcatagcatagcatagcgtAGCATAACATGTATTAGCTACAGAGTGGAAAGCgaagtttgtcttttgttttttttctttcagttagTCTAATTTCATGTAGACATTCGACGCGAGCTACATTGTGAGGCTTTTGGAAGATCCCGCCCCCTTGTATTGGATTGGGTCACACTGTTCCGCTCTTCTTGTTACGATTGGCTGATGGTTTTACTGTCACTCACGAGCTGAGCGCTGATTGGACAGAATCCCTGTGCTGGAGGATTTGTCGGAAAACGAGgggggaaagaaaaataacGCCAGCTCCTGGATTTTAAAAGACAGTCGCTGTAATCGCTTCAGCTTGCAGGAGGTAAAGCTGGCAGACATGGACGAGCAGAGCGTCGAGAGTATAGCGGAGGTGTTTCGCTGCTTCATTTGTATGGAGAAGCTGCGAGATGCTCGTCTCTGCCCCCACTGCTCCAAACTCTGCTGCTTCAGCTGTATAcggcgCTGGCTGACGGAGCAGAGGGCACAGTGTCCACACTGCCGggctCCGTTACAGCTGCGGGAGCTGGTGAACTGTCGCTGGGCCGAGGAGGTCACGCAGCAGCTGGACACACTGCAGCTCTGTAATCTCTCCAAACACGAAGAGAACGACAAAGACAAATGTGAAAACCACCATGAGAAGCTGAGTGTGTTCTGCTGGACCTGTAAGAAATGCATCTGTCATCAGTGTGCACTGTGGGGAGGCATGCATGGTGGACACACGTTTAAGCCGCTGGCTGAGATTTACGAGCAGCACGTCAACAAGGTCAACGAGGAGGTGGCCAAACTCCGACGCCGGCTCATGGAGCTCATCAGCCTCGTCCAGGAAGTGGAGAAGAACGTGGAGGCGGTGCGAGGCGCGAAGGACGAACGAGTGCGCGAGATCAGGAACGCCGTGGAGATGATGATTGCTCGGCTGGACAATCAGCTCAAGAACAAACTCATCACACTCATGGgccAGAAGACGTCCCTCACACAGGAGACGGAGCTGCTCGAGTCTCTGCTGCAGGAAGTGGAGCATCAGCTGCGCTCGTGCAGTAAGAGTGAGCTGATCCTGAAGAGCCCCGAGATCCTGCTCATGTTCCAGCAGGTCCACAGGAAGCCCATGCAGTCCTTCGTCACCACACCTGTACCACCTGACTTcaccagTGAGCTGGTTCCTGCTTACGACTCAAGCACTTTTGTTCTGGCAAACTTCAGtacactgagacagagagcagaCCCCGTGTACAGCCCCCCTCTCCAGGTGTCGGGACTGTGCTGGAGGCTGAAGGTTTACCCTgacGGGAACGGCGTCGTTCGGGGAAATTACCTCTCCGTTTTCCTGGAGCTGTCGGCCGGCCTGCCCGAGACCTCCAAGTACGAGTACCGGGTGGAGATGGTGCACCAGGCTTCCAACGACCCGACCAAGAACATCATCCGAGAGTTCGCGTCCGACTTCGAGGTGGGCGAGTGCTGGGGCTACAACCGCTTCTTCAGACTGGACCTGCTCGCTAGCGAGGGTTACCTCAACATGCAGACCGACACGCTCATCCTGAGGTATCAGGTGCGATCGCCCACCTTCTTCCAGAAGTGCCGGGATCAGTACTGGTACATCAGCCAGCTGGAGGCGGCGCAGTCCAGCTACATCCAACAGATCAACAACCTGAAGGAGAGGCTGGCCATTGAGCTTTTCCGGCGGCAGAAATCTCGGAGCTCGTCCCCGCCGGATCACCGGATGTGCCAGCCCACGTCCACCACCAGCGCCGCCGCCCCGCCGGGCCGAGACTCCCGCCCCGGGAAGAGCGCTGCGGCGGAGGACGGGTCGCTGGTGAACGGAGACCAGGcgaaagaggaggaagaggaggaggaagaggaaaagacaCGGCACGAAGACTCTAACgAGCTGTCTGACGGTGACCTGGAGGTGGACTGTCTGACCGGAGACGAGGACGTGAACCCTCTGGACGGCAGCAGCACGTCCGGCAGCTCCACGGCCACCAGCAACACGGAGGAGAACGACATCgacgaggagaacatGTCTGGAGAGAACGACGTGGAGTACAGCGGAAACCTGGACCTGGAGGAAGGAGAAATTCCTGATGATGTGATAGGAGCCACAGGAGGCTCCAGCGCAGGAATCCGGGGTTCGAGGAGGAGCGCAGCAGGAGCCACGGCCAGTCTGCTGGAGATCGACCCGGTCATCCTGATCCAGCTACTGGACCTGAAAGAGCACAGCCATGTGGAGTCTCTGTGGGGAATCCAGCCCCGGCCGCCCGCCTCGCTGATCCCTAGCCAAGCGACCTTGGTTTCGGCCCGTAAAGAGCGAGAGCGTCGTTCTCAGGCTGTGCGCCGCTCTGCCCCGGACTCGGCCGTTCTGACTCGGCTCAAGGCCCAGATGGCGGAGGTTCGCAGCAAGATGGCGGATGTGAAGGGGCAGCTGGAGGCCCGCGCCGGCGTCTCTGATGCTCGCGTCACTCCTCTGTGCTCGGTTCTGGATCACAACGCCTCGACCGACCCGGAAACAGCAGCAAGACGCAAACCGCGAGAACTCGATCTGCTGTTTAAAGCTCCCGGGACGAGCAGACACGGCCGCCATGgtgGCAAGAAAGCTGTCTCCCCCAAGCAGGAAGTGGGAGGAGCGGTGGGCGGAGTCTCTCTGCGCCGTAGTGGTGAGGCGGGTGAGAAAGAGCTGAGAGGAGCAGTAGGAGACGCTCTCGAACCCTCACTGTGCCCTAGAGAGGGACCCTCCACTGCAGAGAgTTCAGCGAAAGCTCTGAGTGCGCACACTTCCCCTCCGTCTGTCCCGGGTTCCTCCGAGAACCGCCCCAAACTGGACGAGTCTCTGTACGGAGCCGCTGGGAGCGATGCTTTCTCCCTGCCTGTTCTGAGCACAGCGCCCTCCGCAGGCAGCAAACAGCGCAGGTCCACCTGCAGCACTGCTGCACTGCTGACTGACACATCACTAGATTTCGAGCATGACTGCTCCGGAGACATCCACCAATCACTGCTGAGTCTCTCAGAGCCGCCATCTTCCTCCACACGCCCTGAAGAAGGGTTGCTGTGTCAGAAGCCGTCTGCACACCTGTTGCCAGGTATGAGCAGTGACAGTGAGGTGGAGTGTGATACTGAGAACGAGAATGAGGACGACGCTGGAGTTCTGGAGGATGGAGAGGTTCTCCCAATGCCCTGCTCAGAAGAGCAGCTGATGCCAGATGATCTGAGCTTTGTGACCGGGGAGACCACTGAGAGGTGATCAGCAGACTTCCAGACCtcatgagagagtgtgtgtgtgtgtgttatgtgtaaaGTTACAGAGCCTCATTTACATGAGGATACAGTATTTAGAAATGGAAAGCTTATATACTACAGAGCTGTGCATTCCGTTACGTGACCAAgggtgtacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcctggatGGAGATGTTTGACTTGAGGAACAAAGGTCAATATGTGTATTTAATTAAGGACTGATTTAATACTGACTctaaaccactgtgtgtgttttttttttttttgcatttctgttctttaacacatttaaaagaaCTGAAGTTTATCagactgcttttttttgcattaagtAAATAGACGCTTGATAAACTCTTAAAGGAGCATTTTggccaaaaattaaatgtacacaCTGTCCCCTTTTAATTCCAAATCTAGTCTCCACCTACcagactttaggccacgccccctcccTGAGTCTGTGAAAGTGATTCAGCTTCAAGATCTGGCATcgactgtttctctctctctctctctctctctctctctgtgactctGTCCTCTTGTCCATGTTTATAGATAACCGTGTGTCAAACAGCGGACGTTTAatctgtaattaattaatagacGTCTTAAACATTTAATCTTAGGCCGAATTGTTCCTGAGTGAATTTAAGGTCTGAGGATTTTGGCACAATCAAAAAGTgaaagctgctgctgctcttcttcttcttcctgtatttatatttgtgtttattttccagTTAGATGATTTTTAATGCCATTTGGATTCTAAGTTTGTGAACACTACTCCTTGTGATGTTTTGCAGCGTTCTGATTTACTCTATAGCATGCTCTTTTATTTCCTCAGTGGGAGATGGGGAGTGTTTCTTGGTGTTTCTcctccagcagggggcgctTTCCCGAGAGAGCATGTTACACACAGGCACGTGCTGATGCTATCACCCTGTTATCGTTCTACACCATGTTTATGACATTAAATAACCCTCACCTGCGTCTCATCCGAGATTCACCTTCATCACTTGGAGGCAGGAGTTTATCTGACTCTCTGCACCGCTTCTTTAAGAAGGTgcttatctttaaaaaataaatttaaaaaattcacgATAACAGTATTAGGTGTAAAATATCACGGTGTATCGTGTTACTGATTATCAGCACGTACCTGGTTCCACATTTCACACTCCCacattcagttcattttttattttagtttttttttattatttgtctgtACTGTTTTCTTTCCAATGTCATAATAAACGTTTTATTTAAAAGGTcgtatcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgtatttcCTCTTAAGGCTTTAATGTCTGTAATTTTTTCACTCTAATCTTTCCgtttactccaaactcactCCGACTTGAAATAATCAAAGGGTgctaataaatgtttatgtgaaatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309322 lncRNA upstream 22498 517324 ~ 615120 (+) False G261101
TU309327 lncRNA upstream 22498 517324 ~ 615120 (+) True G261101
TU309323 lncRNA upstream 22498 517685 ~ 615120 (+) False G261101
TU309324 lncRNA upstream 67440 517324 ~ 570178 (+) False G261101
TU309345 lncRNA upstream 68435 515729 ~ 569183 (+) False bcl7ba
TU309405 lncRNA downstream 2165 657405 ~ 670966 (+) False LOC117599335
XR_004579793.1 lncRNA downstream 7772 663012 ~ 684364 (+) True LOC117599335
TU309434 lncRNA downstream 50303 705543 ~ 706282 (+) True G261173
TU309437 lncRNA downstream 56184 711424 ~ 713068 (+) True G261176
TU309468 lncRNA downstream 116018 771258 ~ 773261 (+) True G261190
XM_034312453.1 mRNA upstream 1612 623386 ~ 636006 (+) True rabgef1
XM_034312456.1 mRNA upstream 3645 630011 ~ 633973 (+) False rabgef1
XM_034312454.1 mRNA upstream 3646 624886 ~ 633972 (+) False rabgef1
XM_034312455.1 mRNA upstream 3649 623386 ~ 633969 (+) False rabgef1
XM_026910326.2 mRNA upstream 16271 615830 ~ 621347 (+) True kctd7
XM_026910347.2 mRNA downstream 60965 716205 ~ 719326 (+) True atg101
XM_026910340.2 mRNA downstream 74778 730018 ~ 743991 (+) True umodl1
XM_026910342.2 mRNA downstream 74778 730018 ~ 743991 (+) False umodl1
XM_034312870.1 mRNA downstream 107837 763077 ~ 775278 (+) True mogat2
XM_034312867.1 mRNA downstream 126283 781523 ~ 794093 (+) True dgat2
TU309320 other upstream 124845 507497 ~ 512773 (+) False bcl7ba
TU309389 other upstream 151418 482435 ~ 486200 (+) False prdm15
TU309343 other upstream 156907 444767 ~ 480711 (+) True G261104
XR_004579859.1 other upstream 325632 311476 ~ 311986 (+) True LOC117599405
TU309275 other upstream 370858 256626 ~ 266760 (+) True fgf13b
TU309447 other downstream 70587 725827 ~ 727725 (+) True G261178
trnal-uag_7 other downstream 439611 1094851 ~ 1094932 (+) True trnal-uag_7
trnal-aag_10 other downstream 444132 1099372 ~ 1099453 (+) True trnal-aag_10
TU309774 other downstream 446549 1101789 ~ 1112278 (+) True vamp2
TU309863 other downstream 550751 1205991 ~ 1237132 (+) True G261503

Expression Profile