RNA id: TU309434


Basic Information

Item Value
RNA id TU309434
length 406
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G261173
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 705543 ~ 706282 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctctaccCGCATGTGAGAAATGGAGCGCAACAACGCTGCTGCCGACATCTTGAAGAAAAGCTTCCTGATGGATGATGGttggagaggaggaggaggaggagggaggcaACTGCAGCAGTGACGCTGTGCAACGCAAAAACTGGGGATTTACCACTAGGGCACCTCGAGTCACGGACACGGAGGGGGGAACGCACCTCAACACACCGAGCTCACCGCTTTTAAAATCACAGTGTccgcatgcacacacgcacacacacacacacacacacagagagagagaggagccgTTCAGATGCAACTGCATGCACTATACAAATGACAGCATAAAAGAAGCTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579793.1 lncRNA upstream 21179 663012 ~ 684364 (+) True LOC117599335
TU309405 lncRNA upstream 34577 657405 ~ 670966 (+) False LOC117599335
TU309411 lncRNA upstream 49334 603726 ~ 656209 (+) False trim37
TU309322 lncRNA upstream 90423 517324 ~ 615120 (+) False G261101
TU309437 lncRNA downstream 5142 711424 ~ 713068 (+) True G261176
TU309468 lncRNA downstream 64976 771258 ~ 773261 (+) True G261190
TU309461 lncRNA downstream 87918 794200 ~ 795370 (+) True G261183
TU309471 lncRNA downstream 109105 815387 ~ 815836 (+) True G261193
TU309477 lncRNA downstream 149252 855534 ~ 855826 (+) True G261199
XM_034312449.1 mRNA upstream 50303 637618 ~ 655240 (+) True trim37
XM_034312450.1 mRNA upstream 50303 637618 ~ 655240 (+) False trim37
XM_034312451.1 mRNA upstream 50303 638181 ~ 655240 (+) False trim37
XM_034312456.1 mRNA upstream 71570 630011 ~ 633973 (+) False rabgef1
XM_034312454.1 mRNA upstream 71571 624886 ~ 633972 (+) False rabgef1
XM_026910347.2 mRNA downstream 9923 716205 ~ 719326 (+) True atg101
XM_026910340.2 mRNA downstream 23736 730018 ~ 743991 (+) True umodl1
XM_026910342.2 mRNA downstream 23736 730018 ~ 743991 (+) False umodl1
XM_034312870.1 mRNA downstream 56795 763077 ~ 775278 (+) True mogat2
XM_034312867.1 mRNA downstream 75241 781523 ~ 794093 (+) True dgat2
TU309320 other upstream 192770 507497 ~ 512773 (+) False bcl7ba
TU309389 other upstream 219343 482435 ~ 486200 (+) False prdm15
TU309343 other upstream 224832 444767 ~ 480711 (+) True G261104
XR_004579859.1 other upstream 393557 311476 ~ 311986 (+) True LOC117599405
TU309275 other upstream 438783 256626 ~ 266760 (+) True fgf13b
TU309447 other downstream 19545 725827 ~ 727725 (+) True G261178
trnal-uag_7 other downstream 388569 1094851 ~ 1094932 (+) True trnal-uag_7
trnal-aag_10 other downstream 393090 1099372 ~ 1099453 (+) True trnal-aag_10
TU309774 other downstream 395507 1101789 ~ 1112278 (+) True vamp2
TU309863 other downstream 499709 1205991 ~ 1237132 (+) True G261503

Expression Profile