RNA id: TU309437


Basic Information

Item Value
RNA id TU309437
length 1367
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G261176
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 711424 ~ 713068 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGAGTGCACTAAAACAGCCACTTGTGTGGCACGtctaaattacacacacacacacacacacacacacacacacacacacacacacacaaacttgccTCTGAGCTCCTTCCCAGTACAGGATAAGTCTCTGTGTGGCTGCGTGACCCCAAATCTCACCTGATGGACAACCaagcaaccacacacacacacacacacacacacacacatattatatatacatatctatctctctatctatctatctatatacacgcacacagttctgtgcaaaagtcttagtcacatgccaaaaaatgctgtagagcaaagatgccttcaaaaataatgaaattaaaaaaatcctataaagagcagtaaacagtaataaatgaaacaaagtcagtatttaatgtgacgatccttcgctttaaataaataaaacagtatctgaggtgcagtgtgtgcagttttctaaggaaatgagctggaagtgttactgagcatcttgcagaagcagccacagttcttctggagactttgactgtcgactcgcttcttatttctgcagcgaaacccagcagccttcattatgtttttatctgaaaagtgtctcttatggaatctgctgctttctttactgaaatacaaacatttttatgtaacgtttcattttgtgctggaaaactaatgtttggaatctaaaatgtttttgtactaaatcaataatgtagaaggaCATCTataagtctgaaaaaaaaagggggtgccaagacttttgcacagtgctgtatgtatatataaaagcaCACTTCAGCCTGTACTGCCCTCTACTGGACAATCTGATAATTCCCCATTCccaatgctaaactggaggccatACACTTGTTATATtccattatttgttagctacattagcatcatCATCACTCCAGAGTCAGCCTTGCAGAAGGAGCAGGTTACCCAGAGCAGGGATGAGCTTGGATTGGCCGCTCGAGACTTTAGTCgtcatctgattggtcagcaccACCTGCGAACAGCACAcaggagtgaagtgtgtgttattttcaaaatgaaacacactaaactgtttgtttgtgtgttgaatTTATCTAAAGCCTTTCTAACACCCTGATCACCAGTTGCTACGTCTCTTCTACCTGCcgcaagccccgcccacttcttACAGCGTCACTCGCATCCGTCACgccacacaaaacacactccatCATCCGGGGCTTTTACCTGTCTCACAGGGGTTCAtgttcctcagtgtgtgtgtagtgtgtgtgtacagtgtgtgtgtatactgtgtttgtgtatagtgtatagtgtgtgtgtgtgtgtgtgtatagtgtgtgtatagtgtattgtgtgtgtatagtgtata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309434 lncRNA upstream 5142 705543 ~ 706282 (+) True G261173
XR_004579793.1 lncRNA upstream 27060 663012 ~ 684364 (+) True LOC117599335
TU309405 lncRNA upstream 40458 657405 ~ 670966 (+) False LOC117599335
TU309411 lncRNA upstream 55215 603726 ~ 656209 (+) False trim37
TU309327 lncRNA upstream 96304 517324 ~ 615120 (+) True G261101
TU309468 lncRNA downstream 58190 771258 ~ 773261 (+) True G261190
TU309461 lncRNA downstream 81132 794200 ~ 795370 (+) True G261183
TU309471 lncRNA downstream 102319 815387 ~ 815836 (+) True G261193
TU309477 lncRNA downstream 142466 855534 ~ 855826 (+) True G261199
TU309479 lncRNA downstream 156886 869954 ~ 873772 (+) True G261201
XM_034312449.1 mRNA upstream 56184 637618 ~ 655240 (+) True trim37
XM_034312450.1 mRNA upstream 56184 637618 ~ 655240 (+) False trim37
XM_034312451.1 mRNA upstream 56184 638181 ~ 655240 (+) False trim37
XM_034312456.1 mRNA upstream 77451 630011 ~ 633973 (+) False rabgef1
XM_034312454.1 mRNA upstream 77452 624886 ~ 633972 (+) False rabgef1
XM_026910347.2 mRNA downstream 3137 716205 ~ 719326 (+) True atg101
XM_026910340.2 mRNA downstream 16950 730018 ~ 743991 (+) True umodl1
XM_026910342.2 mRNA downstream 16950 730018 ~ 743991 (+) False umodl1
XM_034312870.1 mRNA downstream 50009 763077 ~ 775278 (+) True mogat2
XM_034312867.1 mRNA downstream 68455 781523 ~ 794093 (+) True dgat2
TU309320 other upstream 198651 507497 ~ 512773 (+) False bcl7ba
TU309389 other upstream 225224 482435 ~ 486200 (+) False prdm15
TU309343 other upstream 230713 444767 ~ 480711 (+) True G261104
XR_004579859.1 other upstream 399438 311476 ~ 311986 (+) True LOC117599405
TU309275 other upstream 444664 256626 ~ 266760 (+) True fgf13b
TU309447 other downstream 12759 725827 ~ 727725 (+) True G261178
trnal-uag_7 other downstream 381783 1094851 ~ 1094932 (+) True trnal-uag_7
trnal-aag_10 other downstream 386304 1099372 ~ 1099453 (+) True trnal-aag_10
TU309774 other downstream 388721 1101789 ~ 1112278 (+) True vamp2
TU309863 other downstream 492923 1205991 ~ 1237132 (+) True G261503

Expression Profile