Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU309461 |
| length | 1149 |
| lncRNA type | inter_gene |
| GC content | 0.35 |
| exon number | 2 |
| gene id | G261183 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 794200 ~ 795370 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0031514 | motile cilium | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU309468 | lncRNA | upstream | 20939 | 771258 ~ 773261 (+) | True | G261190 |
| TU309437 | lncRNA | upstream | 81132 | 711424 ~ 713068 (+) | True | G261176 |
| TU309434 | lncRNA | upstream | 87918 | 705543 ~ 706282 (+) | True | G261173 |
| XR_004579793.1 | lncRNA | upstream | 109836 | 663012 ~ 684364 (+) | True | LOC117599335 |
| TU309405 | lncRNA | upstream | 123234 | 657405 ~ 670966 (+) | False | LOC117599335 |
| TU309471 | lncRNA | downstream | 20017 | 815387 ~ 815836 (+) | True | G261193 |
| TU309477 | lncRNA | downstream | 60164 | 855534 ~ 855826 (+) | True | G261199 |
| TU309479 | lncRNA | downstream | 74584 | 869954 ~ 873772 (+) | True | G261201 |
| TU309761 | lncRNA | downstream | 84307 | 879677 ~ 941189 (+) | True | G261415 |
| TU309780 | lncRNA | downstream | 174543 | 969913 ~ 1055910 (+) | True | G261431 |
| XM_034312867.1 | mRNA | upstream | 107 | 781523 ~ 794093 (+) | True | dgat2 |
| XM_034312870.1 | mRNA | upstream | 18922 | 763077 ~ 775278 (+) | True | mogat2 |
| XM_026910340.2 | mRNA | upstream | 50209 | 730018 ~ 743991 (+) | True | umodl1 |
| XM_026910342.2 | mRNA | upstream | 50209 | 730018 ~ 743991 (+) | False | umodl1 |
| XM_026910347.2 | mRNA | upstream | 74874 | 716205 ~ 719326 (+) | True | atg101 |
| XM_034312866.1 | mRNA | downstream | 1469 | 796839 ~ 865864 (+) | True | uvrag |
| XM_026910334.2 | mRNA | downstream | 296709 | 1092079 ~ 1094333 (+) | True | and3 |
| XM_026910335.2 | mRNA | downstream | 306431 | 1101801 ~ 1111982 (+) | False | vamp2 |
| XM_026910332.2 | mRNA | downstream | 324160 | 1119530 ~ 1128252 (+) | True | pcolcea |
| XM_034312493.1 | mRNA | downstream | 565340 | 1360710 ~ 1387400 (+) | True | fgf11b |
| TU309447 | other | upstream | 66475 | 725827 ~ 727725 (+) | True | G261178 |
| TU309320 | other | upstream | 281427 | 507497 ~ 512773 (+) | False | bcl7ba |
| TU309389 | other | upstream | 308000 | 482435 ~ 486200 (+) | False | prdm15 |
| TU309343 | other | upstream | 313489 | 444767 ~ 480711 (+) | True | G261104 |
| XR_004579859.1 | other | upstream | 482214 | 311476 ~ 311986 (+) | True | LOC117599405 |
| trnal-uag_7 | other | downstream | 299481 | 1094851 ~ 1094932 (+) | True | trnal-uag_7 |
| trnal-aag_10 | other | downstream | 304002 | 1099372 ~ 1099453 (+) | True | trnal-aag_10 |
| TU309774 | other | downstream | 306419 | 1101789 ~ 1112278 (+) | True | vamp2 |
| TU309863 | other | downstream | 410621 | 1205991 ~ 1237132 (+) | True | G261503 |
| XR_004579765.1 | other | downstream | 619134 | 1414504 ~ 1419489 (+) | False | ponzr2 |
