RNA id: TU309479


Basic Information

Item Value
RNA id TU309479
length 1311
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G261201
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 869954 ~ 873772 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACATGCCTCAGTGTTCGTTACAGTGGAATTGAGCTGTAATAACATCATCCATGTTTCCACTCCACTGTTCCACTCGTTCTTTCTCAGCCagagcGTGGAGGTATGGAGTGTGTGGAAGAGTGAAGCTGGCACAGGAACTCGCTCCTGGACCGCTTTAACAGGAGAACCATCGGAAATGTTTATCGCAGCGTCTCAGTGCGGAGCAGCGACGCTTCAGAGAGCCAGAGTGTCCTCATCTCACTGGACCTCCagcacagctacacacacacacacacacacacacactcactcattttgTCACTTTGTCACCATCTAGTTAAATAACACGATCTAACTCTAAACAggattacagtttattttagtttattcttCTCCAGCGAGACTCCATCGTTCCTCACGTCTGTAAATCCGCTGCAGCGCGTTCTCACACTGAAGAACCGAATTCATCACAGAGGCGACTGAACGAGTTACGAACAAATGTACGAGGTCAAAACCAGTGCAAACTTCATCAGTGTGGACACAAGCTCCGCCCACTAGCGCCTGATTACCTGTCATATATAcacaaaagtcttggcaccctattttttatttttattttttttactacaaactttgtgatagatgtttattttctgacttctacattattgattcagtacaaaaccattttagattccaaacattagttttccagcacaaaatgaaacgttacagaaaaatgtttgtatgtcagtaaagaaagcagcagattccataagagacacttttcagataaaaacagaatgaaggctgctgggtttcgctgcagaaataagaagcgagtcgacagtcaaagtctccagaagaactgtggctgcttctgcaagatgctcagtaacacttccagctcatttccttataaacctgcacacactgcacctcagatactgctttatttatttaaagtgaaggatcgtcacattaaatactgactttgtttcatttattactgtttactgctctttataggatttttataaatgtagaaacatttaatttcattatttttgaaggcatctttgctctacagcgtTTCTTCACACGTGCCTCAGACTTTTACAGAGAACTGTAGATACATGTGTGTAACTCATACACATCTACTTTACATCGTGCTTCATGCAGAAGAGATGGATATGAGATTTTTCCTCACCATGATATTTGGTGCTGATGTGAAGTTGTTCCTGatgaccaatcgctgatcaccagtgtttgtccatttctttgtttttgggTTTAAACTCTGTTCTTGGTgatatttactgtaataaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309477 lncRNA upstream 14128 855534 ~ 855826 (+) True G261199
TU309471 lncRNA upstream 54118 815387 ~ 815836 (+) True G261193
TU309461 lncRNA upstream 74584 794200 ~ 795370 (+) True G261183
TU309468 lncRNA upstream 96693 771258 ~ 773261 (+) True G261190
TU309437 lncRNA upstream 156886 711424 ~ 713068 (+) True G261176
TU309761 lncRNA downstream 5905 879677 ~ 941189 (+) True G261415
TU309780 lncRNA downstream 96141 969913 ~ 1055910 (+) True G261431
TU309868 lncRNA downstream 292707 1166479 ~ 1204782 (+) True G261508
TU309871 lncRNA downstream 329228 1203000 ~ 1214496 (+) True G261510
TU309899 lncRNA downstream 368052 1241824 ~ 1248681 (+) True G261534
XM_034312866.1 mRNA upstream 4090 796839 ~ 865864 (+) True uvrag
XM_034312867.1 mRNA upstream 75861 781523 ~ 794093 (+) True dgat2
XM_034312870.1 mRNA upstream 94676 763077 ~ 775278 (+) True mogat2
XM_026910340.2 mRNA upstream 125963 730018 ~ 743991 (+) True umodl1
XM_026910342.2 mRNA upstream 125963 730018 ~ 743991 (+) False umodl1
XM_026910334.2 mRNA downstream 218307 1092079 ~ 1094333 (+) True and3
XM_026910335.2 mRNA downstream 228029 1101801 ~ 1111982 (+) False vamp2
XM_026910332.2 mRNA downstream 245758 1119530 ~ 1128252 (+) True pcolcea
XM_034312493.1 mRNA downstream 486938 1360710 ~ 1387400 (+) True fgf11b
XM_026910307.2 mRNA downstream 527777 1401549 ~ 1408834 (+) True cldn7b
TU309447 other upstream 142229 725827 ~ 727725 (+) True G261178
TU309320 other upstream 357181 507497 ~ 512773 (+) False bcl7ba
TU309389 other upstream 383754 482435 ~ 486200 (+) False prdm15
TU309343 other upstream 389243 444767 ~ 480711 (+) True G261104
XR_004579859.1 other upstream 557968 311476 ~ 311986 (+) True LOC117599405
trnal-uag_7 other downstream 221079 1094851 ~ 1094932 (+) True trnal-uag_7
trnal-aag_10 other downstream 225600 1099372 ~ 1099453 (+) True trnal-aag_10
TU309774 other downstream 228017 1101789 ~ 1112278 (+) True vamp2
TU309863 other downstream 332219 1205991 ~ 1237132 (+) True G261503
XR_004579765.1 other downstream 540732 1414504 ~ 1419489 (+) False ponzr2

Expression Profile