RNA id: TU309774


Basic Information

Item Value
RNA id TU309774
length 4737
RNA type TUCP
GC content 0.41
exon number 6
gene id vamp2
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1101789 ~ 1112278 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctctctgttttttgttCTCTTAATCCGAGAGCATCCATTTTTTATGTACGCAGGCTGCTCAGTGTCGGAGCTCGGACACACTAAACCtgctcattttaattaaaataataaataaataaataaaataaacagtgcgggaggaaaaaaaaaacccaaaacagaacaacagcgtgcgtgtgtgtgcgcgtgtttgcGAGAAGAAGCGCGCGCGCccttataataaaaaaaaaccgagagaaggagagaggaaaagaagaaagagagagagagagagagagagagagagagagagaaaacgccGTTTACACCATCTTTCTGTCGGatttgtgtgtgcacgcgcCAACACTAAAGAGAAATGTCTGCTCCAGCCCCCGCCGGCGCCCCCGCCCCTGAAGGAGGGAATCAGCCTCCTCCCAACCTGACCAGCAACCGCCGCCTACAGCAGACGCAGGCTCAGGTGGACGAGGTGGTGGATATCATGCGTGTGAACGTGGATAAAGTTCTGGAGAGGGACCAGAAGCTCTCAGAGCTGGATGACCGAGCCGACGCGCTGCAGGCCGGAGCCTCTCAGTTCGAGACCAGCGCTGCCAAACTCAAGAATAAATACTGGTGGAAGAATgccaagatgatgaTAATCCTGGGGGTGATATGTGTGATCGTGCTCATCGTCATCATCGtctacTTCAGCACCTAAAGAGTGAGTTTCCTACCCCACCCTGCGCCCGATTTACAACTATTCAATCACTACCCAACAAACGAGTGTAAATCTGTGCCCTCGATGACCCCCTGTACGGACCCCGGTCTCTCTGCGTCCCCACGTCCGGcctctgagcgtgtgtgtgtgtgtgtgagtgtgtgtcctctGTAAATACCTCCCGCTTTTCTGAGATCTCTGAAAGCAGACGGTAATCCCGGTAAATCTCTCGGTGTGTGTACGACTTGTCCTTATTTGTAGAGTTTTATTTGTAGAGTtcgtgtgtgggtgtgcgtttgtattttttttttattgttttattttttgtatgacTTCTTTGGCTTGAAAAAACTGCCTATgaatctgtgtgtatataccgCACGATGTGTGTCAGTTATTCTATGCTTGTAGTTTACTTCTTTAACCGAGATACTCTTCCAAAacccaatctctctctctctgtctttctctctctcagtgcatctttctttctttccttctttcttttcaacaATAGACTTTTGTAAACTGCCACAGAAATGATTTGGACCAATGGCgatagatttatatttttattaagtcTGTAGTGTCTTATCTCTTACACATTCCTTTATCGCAGGGTAGAATGATGCTGTCTATTAAAATGAAACGCATACAGGAATATTTTACAAACAGTCTATAATTGGCAAAACCAGTGGACGCACACGACCAGGAAAATAAAAGGGGAATCAGCATGCACAAGAACCTCGTTTTTGATGGCGCATTTAAAccgaaaaataataataacaataataataataataataatttaaaaagtacagCCGAGCTGCCAGCAAAATTAAAAGCACACTGCTCGCATTATTTTTAAGTTACTaggtatttttttgttttttgtttttttctcgaGATTTTATTAGTttgattttatgtttaaatgtaggaatacagtgtatatttataatttttttgcatgtggAAAAGGGACCAGATCATCACCTGGAgtgtgtctgtatatgtttgtgtgagtgtgcatgtgtgtgtgtgtgtctgtgtttgttgaTTTTAGCTGTCTAGTTTATACACTGCCAAGCACCTGGGGgggattttttgtgtgtttttcccgTCCCTTTATGTCCACACTGCTCATACCGGTTTGCTTTTATGCATACAGTGATATAACATAATGCCacctacgcacacacacacacacacacacacacacacacacacacagacacacatatacaggACTTCAGTCACGTAGGACCGATCTGTCAGCATGAAATGAGCCAGTGATGATGTGCTGAGCCACACGTGATCAtttttaccacacacacacacacacacacacacacacacacacacacacaattgccCCCTCCATTCTGTTCATATCTCCCCTCCCCCATGGCCATATGTACAGTTCGCCATTGGATTAAACGACAAGGACTAACAGGCGAAGGCTAGTGTGGCTTAAAGGaataagactgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcaggagCTGAGGAGGTGCCATCTTTGATGTTCTTAATCATGTTATTTCATAAGAAGAACAGTGGCATAAAAAATCTGTGTTCCAATAATTTTGCCTGTTATTTGCGTAGTCATGGAATAAAACCTCCAGAAACTATGCTATTCaattatgctagctagctaaccccTAGCTTCCACTTTAGCTAATTTCCATGCTGTGTAATGGCACTGAGACTGCATAAAAACCGtgcagaaaataattttttttattattctgccCATCAGTCATCTAGTTATACTctataaaaaaattcaagggcAGTGCtcgctaactaactagctatcTTGATGTGAAATTTATAGCTATGGCTTTACCTCATTTAGTGGTACGCAACAGCACAGAGACGGCGtaaaatccaaaaacaacagGTTAAATAATTCTTCTTCTTGTATTTTCCCCCAGCAATCGATTAGTTGTGGAAGAAACCATGCTGAAACTAtgctaactagcttgctagctattATTAACCTATAGCTATAGCTTGTGGAGGTCTGTGTTCATTTCCACTCTGTTTTTAACAGCGTTACTGTTTCCATCTTGTATGGACGATTGtatggagcatttttttttaaatgaacactcactcattcattaatCCCAGAACAGAAACGATTTAAACTGACCAAAGACCTCGTCGTCTTGCTAACGCTGCCAAACTGCCATCAAAAACAGGTTCGGGGACAAAGCGTTTTCCTTTCACGCCTTTCAGTCTCCTCTCTCGGACTCGTCTCGGGTTAAAAGCCCCAACCTGCTGATCTCAGACTTTATTTTTAGTGGACCTAATTCAAGAATAATaagtggtgatgatgatggtgatgaaggtGTCCGCTAGTCTTAGCCACTCAACACTAATAGCACAactcttttatttctcctttcTCCCCTTGTGATGCTGATTTATTTgtagctgttaaaaaaaaaagagaaatgactaTATTGTGTTCGGTGTTGTGCTGTGGGGTGAATCTGGGGGACGGGGGTCCCCACTTCTTCAGGTACATCCAAAAATTGACATATTGAAATTAGGCTGATTTGTTTAGCATCGGGGTAGGACTCATACACGACGGACAAATCACAGAAAGGATCTGAAGtggaattaataaaaaaatggatgtaTGTGCGATTGACTTGATTTCTGTTCCCTTtgtgaaggtgagtgtgtgagtgtgtgtgtatgaagccattcctctgtgtatttattttaggtttaacagtgtgtgtgtgtgtgtgtgtgtgtgtgtggatggaggGGGAACAGGCACGGGTAACTTCACCGCTCCAGTCTGGTTAAGTTCGTGCATCTTCTTGTGCGTCATCGGAgggaagttttaaaaaaatgttttaagaaaAAGGACGCACAACTTCATCGGATTGGCTGTAACGTTTTACCGTCCCACACATGACGtacttttgttttaaactcAATTTGaccttattttatattttatttttttagatgttaGTAAAGGCCACTTCAAGGAGCAGTGGGTCAGTTTCGCTTTGGGGAAAGAGGAatgatttctattttatttttatttttaattagagGAAATGGGCGGGGTGAAATAATTCGATGACGCCATAAtggaaactggaaaaaaaaagtcttgttttTTCAGGTTCTGTTTGAGGAATAGAACGTTAGAGGCTGCATATTTGTGCGTcttaaaacagaaatgcatCTGAGAGGCAATATGTGAAGGTTTTTCAGGCATCCGGGTCACGATGGATGTCTCGTAGTAGCAAATAAAAGCGACAGGACTTGTATCTCAATGGCGTTTCACTACTCGCCCAGGGCATGTTAGGAAATTTGTACTCATAGtctgtttagctagctagcttattacaatattattgaTGTCACACTTTGACGTAACCAATCATGGTTGGTTCTTGTCTGCCAGGATGTTTAGGAATTTGCTAGGTCTACGTCAAACTtagctaaataataaacaatccAAACCATGATGCCATTATGAACATGGAAGAAACTGCAACGAACCATACACCAGTTTTCCCCATCAGAGTATCCAGTCTCCTGGATTCGCTACTACGAGACATAGAACTAAGCCTGGTTTCTGAaactatttgtatttaatttctttatttatttaattcagaaATGTAGATTTGCGTTGCTCCTGTTCGTCTGGCCTTTTCGGAGGGACTTGGTCGGATAAACATGGGCAACACAGCCTACAAAgccagattttatttatttatttatttactctatcCACATATTTGTCTTCACCTTTTCGGATATTAAACAGGACAAAGTACAATGTTACCGGAAAACCGTTCGATAATCAGACATCCACTGAAACAGTTGTAGAGTAAATCTGTCAATGTCTAATTATATCGATGAACATCTTGggattatatataaatatataaatatataaatatacatatatactggggaaaataatgacattatgATGACCTGTGTTTATTGTTCCGAGTTAGAaattacaatgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309780 lncRNA upstream 45879 969913 ~ 1055910 (+) True G261431
TU309761 lncRNA upstream 160600 879677 ~ 941189 (+) True G261415
TU309479 lncRNA upstream 228017 869954 ~ 873772 (+) True G261201
TU309477 lncRNA upstream 245963 855534 ~ 855826 (+) True G261199
TU309471 lncRNA upstream 285953 815387 ~ 815836 (+) True G261193
TU309868 lncRNA downstream 54201 1166479 ~ 1204782 (+) True G261508
TU309871 lncRNA downstream 90722 1203000 ~ 1214496 (+) True G261510
TU309899 lncRNA downstream 129546 1241824 ~ 1248681 (+) True G261534
TU309901 lncRNA downstream 133522 1245800 ~ 1246611 (+) True G261536
TU309909 lncRNA downstream 151029 1263307 ~ 1264140 (+) True G261544
XM_026910334.2 mRNA upstream 7456 1092079 ~ 1094333 (+) True and3
XM_034312866.1 mRNA upstream 235925 796839 ~ 865864 (+) True uvrag
XM_034312867.1 mRNA upstream 307696 781523 ~ 794093 (+) True dgat2
XM_034312870.1 mRNA upstream 326511 763077 ~ 775278 (+) True mogat2
XM_026910342.2 mRNA upstream 357798 730018 ~ 743991 (+) False umodl1
XM_026910332.2 mRNA downstream 7252 1119530 ~ 1128252 (+) True pcolcea
XM_034312493.1 mRNA downstream 248432 1360710 ~ 1387400 (+) True fgf11b
XM_026910307.2 mRNA downstream 289271 1401549 ~ 1408834 (+) True cldn7b
XM_026910308.2 mRNA downstream 299708 1411986 ~ 1418862 (+) False ponzr2
XM_034312304.1 mRNA downstream 302226 1414504 ~ 1419489 (+) True ponzr2
trnal-aag_10 other upstream 2336 1099372 ~ 1099453 (+) True trnal-aag_10
trnal-uag_7 other upstream 6857 1094851 ~ 1094932 (+) True trnal-uag_7
TU309447 other upstream 374064 725827 ~ 727725 (+) True G261178
TU309320 other upstream 589016 507497 ~ 512773 (+) False bcl7ba
TU309389 other upstream 615589 482435 ~ 486200 (+) False prdm15
TU309863 other downstream 93713 1205991 ~ 1237132 (+) True G261503
XR_004579765.1 other downstream 302226 1414504 ~ 1419489 (+) False ponzr2
XR_004579764.1 other downstream 302226 1414504 ~ 1419435 (+) False ponzr2
XR_004579857.1 other downstream 1231383 2343661 ~ 2347385 (+) True LOC117599403
TU311007 other downstream 1683270 2795548 ~ 2817258 (+) False pcp4a

Expression Profile