RNA id: TU309909


Basic Information

Item Value
RNA id TU309909
length 834
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G261544
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1263307 ~ 1264140 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAAAAACGTGTCTCCTGAAGCATTATGTAAGGACTCAGAGACGCCTGTGAGTTTTATAACGTCTTTTAATGTTCTCCAGTTcatatacacaacatacagTGTGTAATAGCCTTTATATGAAATAGAAATATGAACGCCGTTTTCCCCCGAACCCGTTACTCTCATCCCGAGTCGCTGCGactgaacaaaatgaaaagcaaCAGGTGCAAGTGTATATTTGGCGACCCAGCGTTAATATTAGAGCAGGTGCACTTAGTAAATATCTGTAATATATCTCTATCCCTCCCCCATCAcacagttatacacacacacacacacacacacacacacggccacgGCAGACGAGAGGATCACCGTGAGATTTGGTGACAGTGTGCTTCACGAGTCTGTCCGCTGCCTCTCAGTCCCTCTGTACAAAAATATGGACAGTTTCAATTCTCTATTTCTGAAATATAACACGCAGAGAGGTTTCAATCTCCATAAACTTAAACCGTAACGGGTTCGAGTGAGGATCACATGGCCACGGGGTCATGTGATCAAATCAACGAATGATGATCAAGAAACGTAATCCGTTATACGACATTTTAATCGTGGACGCTTCAAAATATCATCATTACACCCCGGGGTTCAATACGACACGCAGCGACATCACCGTTCATTCCAGATGAATCAATTCTCACATCATCGTGTTACACTGTtaaacacctcacacacacacacacacacacacacgtatacacacacacacatgcacgcacacacacacacacacacacacacacacacacacgcacacacacacacacatgcacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309899 lncRNA upstream 14626 1241824 ~ 1248681 (+) True G261534
TU309901 lncRNA upstream 16696 1245800 ~ 1246611 (+) True G261536
TU309871 lncRNA upstream 48811 1203000 ~ 1214496 (+) True G261510
TU309868 lncRNA upstream 58525 1166479 ~ 1204782 (+) True G261508
TU309780 lncRNA upstream 207397 969913 ~ 1055910 (+) True G261431
TU309950 lncRNA downstream 69642 1333782 ~ 1333986 (+) True G261585
TU309975 lncRNA downstream 164010 1428150 ~ 1487270 (+) False LOC113524197
TU309973 lncRNA downstream 187959 1452099 ~ 1507489 (+) False LOC113524197
TU309969 lncRNA downstream 201428 1465568 ~ 1471657 (+) False LOC113524197
TU309972 lncRNA downstream 201428 1465568 ~ 1470922 (+) True LOC113524197
XM_026910332.2 mRNA upstream 135055 1119530 ~ 1128252 (+) True pcolcea
XM_026910335.2 mRNA upstream 151325 1101801 ~ 1111982 (+) False vamp2
XM_026910334.2 mRNA upstream 168974 1092079 ~ 1094333 (+) True and3
XM_034312866.1 mRNA upstream 397443 796839 ~ 865864 (+) True uvrag
XM_034312867.1 mRNA upstream 469214 781523 ~ 794093 (+) True dgat2
XM_034312493.1 mRNA downstream 96570 1360710 ~ 1387400 (+) True fgf11b
XM_026910307.2 mRNA downstream 137409 1401549 ~ 1408834 (+) True cldn7b
XM_026910308.2 mRNA downstream 147846 1411986 ~ 1418862 (+) False ponzr2
XM_034312304.1 mRNA downstream 150364 1414504 ~ 1419489 (+) True ponzr2
XM_034312305.1 mRNA downstream 150364 1414504 ~ 1419489 (+) False ponzr2
TU309863 other upstream 26175 1205991 ~ 1237132 (+) True G261503
TU309774 other upstream 151029 1101789 ~ 1112278 (+) True vamp2
trnal-aag_10 other upstream 163854 1099372 ~ 1099453 (+) True trnal-aag_10
trnal-uag_7 other upstream 168375 1094851 ~ 1094932 (+) True trnal-uag_7
TU309447 other upstream 535582 725827 ~ 727725 (+) True G261178
XR_004579765.1 other downstream 150364 1414504 ~ 1419489 (+) False ponzr2
XR_004579764.1 other downstream 150364 1414504 ~ 1419435 (+) False ponzr2
XR_004579857.1 other downstream 1079521 2343661 ~ 2347385 (+) True LOC117599403
TU311007 other downstream 1531408 2795548 ~ 2817258 (+) False pcp4a
TU312620 other downstream 3813741 5077881 ~ 5080617 (+) False triap1

Expression Profile