RNA id: TU309972


Basic Information

Item Value
RNA id TU309972
length 1453
lncRNA type inter_gene
GC content 0.48
exon number 11
gene id LOC113524197
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1428150 ~ 1510087 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aactctTTATTCCTGTGCAGTAAAATTTGTTTCATTGCAAAAGCATGACAGACACGTTTCATTTATTCCAACTCGGAGGGTAGAGAGCGGCTTTTCTCAGACTTACACATCCAACCTGTGctattttacagtatattcacaAGTCCAGCTTCATATGCTTCAAACTCACACGACACAGAAAATGTTCAGACACAACGTCCCTTAGCTGCACTCATGATGAAATTTACAGATCAGGAGAAGCTCACGCAGCTTCTCAGAGGAATCAGAAACCTGCAAGAGTTTCTGAACATGACAaactcaaaattaaaaaaaagaaagggaaaaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagacaacgaCATAATTTAACTAAGTAAAATGTTGGATTAGTTCTTCACTGTCTGTCTCCACTGCCACAGCTCTCCAATCACCTTTGCATCAGTCACTTTGAAGCCGTTCTTCACATAGTTTTCGAACTTGGGCTGAAGTTTGGGCAGCATCACTCCcttctctaCGCTAGCCATCATCTTGGCCTTGATCTCCGTGATGCTGAGCGGCGCTTGTGGAGTTTTGGGCGTCTTCGGGCTTTTGGGGGTCTGTGGTTTCTTCTCGTTCTTCTTGCCAGCATCTGGtgtcttgttCTGTTTGGGTGCTGGTGTGTTGGATTTGCCGTTCTGAGCAGGAGTCTGGGGTTTGGCTGCCGGCTTCTTGGCCTTCACTGGCGTCTCCTCCTcgctctcttcctcctcctcctcatcatcctcctcatccTCTTCATCATCGTCATCTTCCTCATCgtcatcttcatcctcctcttccatCTTCATCTTTTTTGATGGCTTTGCAGCCGCTGGAGCTCCTCTCTTCACAGCTGtcctcatctcctcctcctcttcctcctcatcttcatcaAAAGACTGATCTCCGCTCATCATGATGAGGTGCTGGCCGCTGATGTGAACTGGACCGGAACCGGTACGCAGACGGAAAACTACAGGAGGACTGATCTCGAACCCACCCAGACACACGCTCGGCATGCTGGACGGCTTCAGCGTGGCCAGCACGGCTTTGACCTTCTGACCCTCCGAGTCCTGGCCCTCGACTTCCACGACGTTCAGCTCGTCTTTGGTGGCCGGATCGACACACGCCATCCTGACGGACAGCTGATGCTCGAAGTCGTCATCCTCGGGGTTAAAGGTCACTTCCTTTCCCTCTTTCAGCTCGCAGCCTGTGAAATAATTCAACACAAACATGTGTAGACCTGCAACTGATCAGCATgaagtgagtaaaaaaaaaaaaacgagttaATACACAAACACTGTGCAAAGAGGAAAACTGAGAGGCGCGTGATGAGGGGTGTGAGCTGCGCGAGCTGCGTCTCCACGTGCGTGCGGTGTGCGTGCGTGCACGTGCGCCATCTCGCGAAAAAAAGCATAACCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309950 lncRNA upstream 131582 1333782 ~ 1333986 (+) True G261585
TU309909 lncRNA upstream 201428 1263307 ~ 1264140 (+) True G261544
TU309899 lncRNA upstream 216887 1241824 ~ 1248681 (+) True G261534
TU309901 lncRNA upstream 218957 1245800 ~ 1246611 (+) True G261536
TU309871 lncRNA upstream 251072 1203000 ~ 1214496 (+) True G261510
TU310010 lncRNA downstream 125840 1596762 ~ 1610711 (+) True G261634
TU310014 lncRNA downstream 129549 1600471 ~ 1615601 (+) True G261638
TU310021 lncRNA downstream 156764 1627686 ~ 1678077 (+) True G261642
TU310024 lncRNA downstream 163689 1634611 ~ 1644162 (+) True G261644
TU310020 lncRNA downstream 167180 1638102 ~ 1678077 (+) False G261642
XM_026910298.2 mRNA upstream 4344 1450158 ~ 1461224 (+) True tlx3b
XM_026910312.2 mRNA upstream 42103 1420371 ~ 1423465 (+) True LOC113524161
XM_034312304.1 mRNA upstream 46079 1414504 ~ 1419489 (+) True ponzr2
XM_034312431.1 mRNA downstream 41642 1512564 ~ 1523146 (+) True LOC113524165
XM_026910354.2 mRNA downstream 81346 1552268 ~ 1553689 (+) True LOC113524200
XM_034312266.1 mRNA downstream 341677 1812599 ~ 1826322 (+) False fgf18b
XM_034312267.1 mRNA downstream 341677 1812599 ~ 1826322 (+) False fgf18b
XM_026944035.2 mRNA downstream 341777 1812699 ~ 1826322 (+) False fgf18b
XR_004579765.1 other upstream 46079 1414504 ~ 1419489 (+) False ponzr2
XR_004579764.1 other upstream 46133 1414504 ~ 1419435 (+) False ponzr2
TU309863 other upstream 228436 1205991 ~ 1237132 (+) True G261503
TU309774 other upstream 353290 1101789 ~ 1112278 (+) True vamp2
trnal-aag_10 other upstream 366115 1099372 ~ 1099453 (+) True trnal-aag_10
XR_004579857.1 other downstream 872739 2343661 ~ 2347385 (+) True LOC117599403
TU311007 other downstream 1324626 2795548 ~ 2817258 (+) False pcp4a
TU312620 other downstream 3606959 5077881 ~ 5080617 (+) False triap1
TU313203 other downstream 4537878 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 5595949 7066871 ~ 7082441 (+) True G264948

Expression Profile