RNA id: TU310014


Basic Information

Item Value
RNA id TU310014
length 3075
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G261638
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1600471 ~ 1615601 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGACGATCATGTAATCTTTACAATATCTACGTGGCACGAGCGCCATAAAAAGCGGATAATTTTTATAGCCTACATTATATCGTGCATTTTAATGTATATCCAAAAATGCAGAatgataaaggaaaaaaacaagaaagtgtTGGAAAGTGTGGAATTTGAGAAACTGCATACTGAAActgcaatctctctctctctctctctctctttctctttctctttgtcacacacatacagctgttACACCACAAGCAAGTACTCGAatttaactaaataaaacagTACTCAAAACAATTAACAGCCTACATTACACTGTAGCCTATCTGAAATACCGTTAAGGCAAACCGCATCTTTCCTCACCTGCTGACTCTCAAACGTCCACGTGCTGTCCGGAAGTGACGCATCGAGCACGCTCAGAGTGTTTGTAAAGTCTGTGGTGCTGCTGGGCTTAACGAGGGTGAAATCACTGAATTCGGACATTGGAGAGAGATAGGAGCCGAAGGACTGACTCTGAGACATCATGTCTCCTCCCAGCACCTCCACATATTTAATGGGTCCGTCAGTGTTGAGCTGGATCTGCAGGTTTCTGTTGGGGTTTTTATATTCACAATCGCTCCGTCTGATACAGCAACTCGAGCTGCCTCTACTGCTTCGAGCACATTTTACCAATAAGACCAAAAATGTCACCAAACACAGCAGTGAGACGGAGGCGAGAGAAATGATGAGATATAACGTGATTTTGCTACTTTTCTTATCaggttctgtgtttttgtgtctaaAGTCTGAGACTGGTTCATGAAAGCCGTCCTCTATCAGTATATCCACAGTGACTGTGGTGGACTGCACCGGTTCTCCGTTGTCCTTTATCTCTATGAGCAGTCTCTGAGAGGAGTCATCCTGCTCTGCAACAGAGCGCTTAGTCCTCACCTCTCCTGTGTGTAAAGTGACAGTGAAGAGAGACGCGTCCGTGGCCTCCGCTAGCCGATAGGAAATCCAGGCGTTATGGCCCGAGTCAGCGTCCACTGCTGTGACTTTAGTAACGAGGTGTCCTGCTTTAGCGGAGCGGGGCATCCTCTGATGAGACACAGAGCCCATGAGTGCGGAGGGGTAAATGACAGCGGGGGCGTTGTCGTTCTGGTCCACGATAAAAACATGAACCGTGGCGTTGCTGCTCAGAGACGGAGAGCCGTGATCTTTCGCTTGGACTTGGAGCTGAAACACTTTCATCTTTTCGTGATCAAATGAGTGCATGCTAAAAATGCTCCCATTGTCTGAATTAATATAGATATAAGATGACAGTGGCGTGTCGAGTACTCTGGAGTCTAAAATAGAATAAGAAATTTTAGCATTTTCTCCCTGATCTGGATCAGAAGCCGACACCGAACACAGTATTGATCCAGCAGCGCTGTTTTCTTTAACGTGGACAACATAAGATGGCTGCGTAAAAACAGGTGCGTTATCGTTTACATCTAAAACATTTACGAGTATTTCTTGCTTAGACGTGAGCTGTGGTGATCCTGAATCAGCAGCAACAATCACAACAGTATACGCAGCGTGCGCTTCTCTGTCCAATTTCTGATCTGTGATTAAGGTGTAATGATTTGATAaagatgtttttaaagaaaatggcGTTCCAGGTAATAAAGTCAAGGTAACCTGACCATTATCACCTTTGTCTAAGTCTTTGGCGCTTATCAAAGCTACTACAGTGCCACCAGGAGCGTCTTCCCGGACAGGACTGGGTGAGGATTTCAATATGATCTCTGGTGCGTTATCGTTCATATCTAATATATCCAAATGGACACTACACACACCCTCCATTGGGGGATTGCCTTTGTCTCTGGCTACAATATCAAAATCAAAGGACCTGTCGGTCTCgtaatctattttattttttaccttaAGCTCACCAGTAGCTGGATCCACAGAAAACAAACTGCTTAGCGTGTCTGGGGTGTGAGGACCAAACGAATAGCTCATTTCTTTGTTTGCGCCTTCATCTAGATCTATAGCTCTTACAGTAAGCACAACCACTCCTGGGGCCGTGTTTTCTGTGATTTGCTCGTCATATTGAGGTTTTTCAAAAACTGGAGCATTATCATTTGTGTCAAGTACACGAACGGAGATTTTTGTTGTGCCAGATCTTGCAGGCTTTCCGCCATCTAAAGCAGTCAGCGTGAGACTGACTATTGACTGTTTTTCTCTGTCCAAAGATTTTTCTAATACAAGCTCTGGCACACGAGATCCATCTTTAGCTATTTTCACATCTAGTGCAAAATGCTCATTTTTGCTCAGTGTGTAAGTGCGCAGTGAATTTGATCCCACATCAGGATCCTGGGCTGATTCTAAACGAAATCGTGCACCAGGCACAGTTGACTCAGCGATATTTAACGTGCTTTCCTTATTTTGAAAAACCGGAGAATTGTCATTAATGTCCTGAATTTCTATTTCAAAACGAAACAGTTGCAAAGGATTCTCTGCAATAGCTTCTAGAGTAAGAATACAAGTGGCGCTTTGGCCGCATAAATTCTCCCTGTCAATTCTCTCCTGCACGACCAGTTCACCCTTTGTTAGATCCACACCAAAATACTGCTTACCAGACTCGACAGCAATCCGCAATTTCCGTTCAAACACCTCAGATAATTTTAAATCCAGATCTTTGGCAATATTTCCAACCACAGTGCCCTCGTTTTGCTCCTCTGGTATTGTGTAGCGAATCTGTGCCTCGGTAATATTCCACACAGCAAACGCATAGAGCAGCCCGGCAATCCACCATTTTCTCCTCATATTTATCCTCAGTGTCTCCATTTCCAATACTTACACGTTAACGCGCGATAAATACGCTTGTGACTCATTGCATATGTAGTAAAAATGATTCTTCTACTGATCGAGTAGCAGAAGAAATCTGTGCGCGTTCCCAGCTCTCGGCTGAAGCTCTTCTTTTGAGAGTAATGACACAATAGAAAGGGGGAGGGAGTAGATCTCTTTGTACTGTAAAGCCTTCCTATTGGCTTTCAGCACACCAATAGAACAAACCCAAGAACACTCtgctgtttaaagagacagtgtgagaggaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402517.2 lncRNA upstream 90384 1470621 ~ 1510087 (+) False LOC113524197
TU309973 lncRNA upstream 92982 1452099 ~ 1507489 (+) False LOC113524197
TU309975 lncRNA upstream 113201 1428150 ~ 1487270 (+) False LOC113524197
TU310021 lncRNA downstream 12085 1627686 ~ 1678077 (+) True G261642
TU310024 lncRNA downstream 19010 1634611 ~ 1644162 (+) True G261644
TU310020 lncRNA downstream 22501 1638102 ~ 1678077 (+) False G261642
TU310022 lncRNA downstream 66618 1682219 ~ 1696197 (+) True G261643
TU310023 lncRNA downstream 66618 1682219 ~ 1704174 (+) False G261643
XM_026910354.2 mRNA upstream 46782 1552268 ~ 1553689 (+) True LOC113524200
XM_034312431.1 mRNA upstream 77325 1512564 ~ 1523146 (+) True LOC113524165
XM_026910298.2 mRNA upstream 139247 1450158 ~ 1461224 (+) True tlx3b
XM_026910312.2 mRNA upstream 177006 1420371 ~ 1423465 (+) True LOC113524161
XM_026910309.2 mRNA upstream 181609 1414504 ~ 1418862 (+) False ponzr2
XM_034312266.1 mRNA downstream 196998 1812599 ~ 1826322 (+) False fgf18b
XM_034312267.1 mRNA downstream 196998 1812599 ~ 1826322 (+) False fgf18b
XM_026944035.2 mRNA downstream 197098 1812699 ~ 1826322 (+) False fgf18b
XM_034312269.1 mRNA downstream 197885 1813486 ~ 1826322 (+) True fgf18b
XM_034312271.1 mRNA downstream 197885 1813486 ~ 1826322 (+) False fgf18b
XR_004579765.1 other upstream 180982 1414504 ~ 1419489 (+) False ponzr2
XR_004579764.1 other upstream 181036 1414504 ~ 1419435 (+) False ponzr2
TU309863 other upstream 363339 1205991 ~ 1237132 (+) True G261503
TU309774 other upstream 488193 1101789 ~ 1112278 (+) True vamp2
trnal-aag_10 other upstream 501018 1099372 ~ 1099453 (+) True trnal-aag_10
XR_004579857.1 other downstream 728060 2343661 ~ 2347385 (+) True LOC117599403
TU311007 other downstream 1179947 2795548 ~ 2817258 (+) False pcp4a
TU312620 other downstream 3462280 5077881 ~ 5080617 (+) False triap1
TU313203 other downstream 4393199 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 5451270 7066871 ~ 7082441 (+) True G264948

Expression Profile