RNA id: TU310625


Basic Information

Item Value
RNA id TU310625
length 226
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G262102
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 2216960 ~ 2217185 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTGTACTAAAAAACTTGTTGTGTCTCTGCAAATCAGATTTGTGGAGTTCTTCAGGGTCTCTAACagacttgctgatgtggttgtCTATAAATGAGGACAAAAGGATGTAACGTTGTAGCACAAATTCACTTCCTTTGACACATTGTTTGGTGTCACTGTGCACCAGCGTCAGATTCAGGTAGGAGGTGTGCCTTAAAGTATAAAGCGTTTTATGTTGGAAGCGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310618 lncRNA upstream 18885 2197870 ~ 2198075 (+) True G262095
TU310477 lncRNA upstream 181495 2035252 ~ 2035465 (+) True G261960
TU310409 lncRNA upstream 360107 1856652 ~ 1856853 (+) True G261894
TU310350 lncRNA upstream 436401 1775490 ~ 1780559 (+) True G261848
TU310355 lncRNA upstream 448976 1763838 ~ 1767984 (+) True G261853
TU310626 lncRNA downstream 301 2217486 ~ 2217846 (+) True G262103
TU310731 lncRNA downstream 86155 2303340 ~ 2303551 (+) True G262201
XR_004579856.1 lncRNA downstream 234832 2452017 ~ 2471013 (+) True LOC117599402
TU310904 lncRNA downstream 287894 2505079 ~ 2505296 (+) True G262369
TU310914 lncRNA downstream 320172 2537357 ~ 2554404 (+) True G262377
XM_026943979.2 mRNA upstream 163724 1982153 ~ 2053236 (+) True pcdh1a
XM_026943948.2 mRNA upstream 343818 1870659 ~ 1873142 (+) True avd
XM_034312271.1 mRNA upstream 390638 1813486 ~ 1826322 (+) False fgf18b
XM_026943933.2 mRNA downstream 433469 2650654 ~ 2653366 (+) True smtlb
XM_026943904.2 mRNA downstream 481059 2698244 ~ 2711113 (+) False LOC113544866
XM_026943903.2 mRNA downstream 481059 2698244 ~ 2710882 (+) True LOC113544866
XM_034312657.1 mRNA downstream 504165 2721350 ~ 2728418 (+) True slc37a4b
XM_026943763.2 mRNA downstream 504165 2721350 ~ 2728418 (+) False slc37a4b
XR_004579765.1 other upstream 797471 1414504 ~ 1419489 (+) False ponzr2
XR_004579764.1 other upstream 797525 1414504 ~ 1419435 (+) False ponzr2
TU309863 other upstream 979828 1205991 ~ 1237132 (+) True G261503
TU309774 other upstream 1104682 1101789 ~ 1112278 (+) True vamp2
trnal-aag_10 other upstream 1117507 1099372 ~ 1099453 (+) True trnal-aag_10
XR_004579857.1 other downstream 126476 2343661 ~ 2347385 (+) True LOC117599403
TU311007 other downstream 578363 2795548 ~ 2817258 (+) False pcp4a
TU312620 other downstream 2860696 5077881 ~ 5080617 (+) False triap1
TU313203 other downstream 3791615 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 4849686 7066871 ~ 7082441 (+) True G264948

Expression Profile