RNA id: TU310904


Basic Information

Item Value
RNA id TU310904
length 218
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G262369
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 2505079 ~ 2505296 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctctttggacggcatattgagagttcccatgaacagctaccaaatgcaaattcaacacttggaatcagctccagaccttttatctccttaatttatcatgatataaggaggaaacaggccacagctggccatgaaactgcttgtcagtcaattgtcccattacttttgagcctgtgaaaatggaggaactctgcaaaaaatggctgtaattcctaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579856.1 lncRNA upstream 34066 2452017 ~ 2471013 (+) True LOC117599402
TU310731 lncRNA upstream 201528 2303340 ~ 2303551 (+) True G262201
TU310626 lncRNA upstream 287233 2217486 ~ 2217846 (+) True G262103
TU310625 lncRNA upstream 287894 2216960 ~ 2217185 (+) True G262102
TU310618 lncRNA upstream 307004 2197870 ~ 2198075 (+) True G262095
TU310914 lncRNA downstream 32061 2537357 ~ 2554404 (+) True G262377
TU310937 lncRNA downstream 133912 2639208 ~ 2665470 (+) True G262395
TU310955 lncRNA downstream 165427 2670723 ~ 2672573 (+) True G262407
TU310957 lncRNA downstream 168245 2673541 ~ 2673761 (+) True G262408
TU310960 lncRNA downstream 175647 2680943 ~ 2681715 (+) True G262411
XM_026943979.2 mRNA upstream 451843 1982153 ~ 2053236 (+) True pcdh1a
XM_026943948.2 mRNA upstream 631937 1870659 ~ 1873142 (+) True avd
XM_034312271.1 mRNA upstream 678757 1813486 ~ 1826322 (+) False fgf18b
XM_026943933.2 mRNA downstream 145358 2650654 ~ 2653366 (+) True smtlb
XM_026943904.2 mRNA downstream 192948 2698244 ~ 2711113 (+) False LOC113544866
XM_026943903.2 mRNA downstream 192948 2698244 ~ 2710882 (+) True LOC113544866
XM_034312657.1 mRNA downstream 216054 2721350 ~ 2728418 (+) True slc37a4b
XM_026943763.2 mRNA downstream 216054 2721350 ~ 2728418 (+) False slc37a4b
XR_004579857.1 other upstream 157694 2343661 ~ 2347385 (+) True LOC117599403
XR_004579765.1 other upstream 1085590 1414504 ~ 1419489 (+) False ponzr2
XR_004579764.1 other upstream 1085644 1414504 ~ 1419435 (+) False ponzr2
TU309863 other upstream 1267947 1205991 ~ 1237132 (+) True G261503
TU309774 other upstream 1392801 1101789 ~ 1112278 (+) True vamp2
TU311007 other downstream 290252 2795548 ~ 2817258 (+) False pcp4a
TU312620 other downstream 2572585 5077881 ~ 5080617 (+) False triap1
TU313203 other downstream 3503504 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 4561575 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 4610764 7116060 ~ 7118616 (+) False ddx55

Expression Profile