RNA id: TU310937


Basic Information

Item Value
RNA id TU310937
length 527
lncRNA type sense_over
GC content 0.48
exon number 2
gene id G262395
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 2639208 ~ 2665470 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAAAAACAAaaaaaaaaaaaaaaaaaaaagctgggtttgattttttttttttgccctgtaCATGATCTCTGAGGATTTCTGTGTTTAATGCAGGCTGCAGCTTTGGTACACAATACCCTGATTATTTATCGATCTCATTACAGCACTCATTTCAAAGTTCCTGGTTATTAATTTGATTTCTTTTCCACATGGTGTCGATGTGAGCAGCTGTCAGGTCAGATTCCTGTCACGGGTATTAACATATTAAAGATTCTGATTCTCCTTCTCTGTGCTCACACGATGTTCCTCTCCAGCATGGGCTCCTGGCAGAGGATGCGCTTGACGTCGAAGGCGCTCAGGTCGATGGTCTTAAACCCTCCGTCCAGGATGAGCTCGGCCACGGCGCGGCCCACGGCGGGAGACTGCTGCAGCCCGTGTCCGCTGAAACCCGTTGCGAAGTACATGTTGTTGACCAGCGGGTGCAGACCCACGATGCCGTTCTGGTCGAACGTGTTGTAGTCGTAAAACCCCGCCCATGCTCCTGTca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310914 lncRNA upstream 84804 2537357 ~ 2554404 (+) True G262377
TU310904 lncRNA upstream 133912 2505079 ~ 2505296 (+) True G262369
XR_004579856.1 lncRNA upstream 168195 2452017 ~ 2471013 (+) True LOC117599402
TU310731 lncRNA upstream 335657 2303340 ~ 2303551 (+) True G262201
TU310626 lncRNA upstream 421362 2217486 ~ 2217846 (+) True G262103
TU310955 lncRNA downstream 5253 2670723 ~ 2672573 (+) True G262407
TU310957 lncRNA downstream 8071 2673541 ~ 2673761 (+) True G262408
TU310960 lncRNA downstream 15473 2680943 ~ 2681715 (+) True G262411
TU310961 lncRNA downstream 19325 2684795 ~ 2686474 (+) True G262412
TU310987 lncRNA downstream 78958 2744428 ~ 2747317 (+) True rps25
XM_026943979.2 mRNA upstream 585972 1982153 ~ 2053236 (+) True pcdh1a
XM_026943948.2 mRNA upstream 766066 1870659 ~ 1873142 (+) True avd
XM_034312271.1 mRNA upstream 812886 1813486 ~ 1826322 (+) False fgf18b
XM_026943904.2 mRNA downstream 32774 2698244 ~ 2711113 (+) False LOC113544866
XM_026943903.2 mRNA downstream 32774 2698244 ~ 2710882 (+) True LOC113544866
XM_034312657.1 mRNA downstream 55880 2721350 ~ 2728418 (+) True slc37a4b
XM_026943763.2 mRNA downstream 55880 2721350 ~ 2728418 (+) False slc37a4b
XM_034312856.1 mRNA downstream 78926 2744396 ~ 2747268 (+) False rps25
XR_004579857.1 other upstream 291823 2343661 ~ 2347385 (+) True LOC117599403
XR_004579765.1 other upstream 1219719 1414504 ~ 1419489 (+) False ponzr2
XR_004579764.1 other upstream 1219773 1414504 ~ 1419435 (+) False ponzr2
TU309863 other upstream 1402076 1205991 ~ 1237132 (+) True G261503
TU309774 other upstream 1526930 1101789 ~ 1112278 (+) True vamp2
TU311007 other downstream 130078 2795548 ~ 2817258 (+) False pcp4a
TU312620 other downstream 2412411 5077881 ~ 5080617 (+) False triap1
TU313203 other downstream 3343330 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 4401401 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 4450590 7116060 ~ 7118616 (+) False ddx55

Expression Profile