Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU310960 |
| length | 686 |
| lncRNA type | inter_gene |
| GC content | 0.43 |
| exon number | 2 |
| gene id | G262411 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 2680943 ~ 2681715 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU310957 | lncRNA | upstream | 7182 | 2673541 ~ 2673761 (+) | True | G262408 |
| TU310955 | lncRNA | upstream | 8370 | 2670723 ~ 2672573 (+) | True | G262407 |
| TU310937 | lncRNA | upstream | 15473 | 2639208 ~ 2665470 (+) | True | G262395 |
| TU310914 | lncRNA | upstream | 126539 | 2537357 ~ 2554404 (+) | True | G262377 |
| TU310904 | lncRNA | upstream | 175647 | 2505079 ~ 2505296 (+) | True | G262369 |
| TU310961 | lncRNA | downstream | 3080 | 2684795 ~ 2686474 (+) | True | G262412 |
| TU310987 | lncRNA | downstream | 62713 | 2744428 ~ 2747317 (+) | True | rps25 |
| TU310996 | lncRNA | downstream | 74892 | 2756607 ~ 2760152 (+) | True | G262440 |
| TU310997 | lncRNA | downstream | 75355 | 2757070 ~ 2792408 (+) | False | G262440 |
| TU311004 | lncRNA | downstream | 75355 | 2757070 ~ 2791711 (+) | False | G262440 |
| XM_026943933.2 | mRNA | upstream | 27577 | 2650654 ~ 2653366 (+) | True | smtlb |
| XM_026943979.2 | mRNA | upstream | 627707 | 1982153 ~ 2053236 (+) | True | pcdh1a |
| XM_026943948.2 | mRNA | upstream | 807801 | 1870659 ~ 1873142 (+) | True | avd |
| XM_034312268.1 | mRNA | upstream | 854621 | 1816565 ~ 1826322 (+) | False | fgf18b |
| XM_026943904.2 | mRNA | downstream | 16529 | 2698244 ~ 2711113 (+) | False | LOC113544866 |
| XM_026943903.2 | mRNA | downstream | 16529 | 2698244 ~ 2710882 (+) | True | LOC113544866 |
| XM_034312657.1 | mRNA | downstream | 39635 | 2721350 ~ 2728418 (+) | True | slc37a4b |
| XM_026943763.2 | mRNA | downstream | 39635 | 2721350 ~ 2728418 (+) | False | slc37a4b |
| XM_034312856.1 | mRNA | downstream | 62681 | 2744396 ~ 2747268 (+) | False | rps25 |
| XR_004579857.1 | other | upstream | 333558 | 2343661 ~ 2347385 (+) | True | LOC117599403 |
| XR_004579765.1 | other | upstream | 1261454 | 1414504 ~ 1419489 (+) | False | ponzr2 |
| XR_004579764.1 | other | upstream | 1261508 | 1414504 ~ 1419435 (+) | False | ponzr2 |
| TU309863 | other | upstream | 1443811 | 1205991 ~ 1237132 (+) | True | G261503 |
| TU309774 | other | upstream | 1568665 | 1101789 ~ 1112278 (+) | True | vamp2 |
| TU311007 | other | downstream | 113833 | 2795548 ~ 2817258 (+) | False | pcp4a |
| TU312620 | other | downstream | 2396166 | 5077881 ~ 5080617 (+) | False | triap1 |
| TU313203 | other | downstream | 3327085 | 6008800 ~ 6011902 (+) | True | G264336 |
| TU313925 | other | downstream | 4385156 | 7066871 ~ 7082441 (+) | True | G264948 |
| TU313944 | other | downstream | 4434345 | 7116060 ~ 7118616 (+) | False | ddx55 |
