Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU310961 |
| length | 481 |
| lncRNA type | inter_gene |
| GC content | 0.48 |
| exon number | 2 |
| gene id | G262412 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 2684795 ~ 2686474 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0022613 | ribonucleoprotein complex biogenesis | biological_process |
| GO:0042254 | ribosome biogenesis | biological_process |
| id | description |
|---|---|
| ko03050 | Proteasome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU310960 | lncRNA | upstream | 3080 | 2680943 ~ 2681715 (+) | True | G262411 |
| TU310957 | lncRNA | upstream | 11034 | 2673541 ~ 2673761 (+) | True | G262408 |
| TU310955 | lncRNA | upstream | 12222 | 2670723 ~ 2672573 (+) | True | G262407 |
| TU310937 | lncRNA | upstream | 19325 | 2639208 ~ 2665470 (+) | True | G262395 |
| TU310914 | lncRNA | upstream | 130391 | 2537357 ~ 2554404 (+) | True | G262377 |
| TU310987 | lncRNA | downstream | 57954 | 2744428 ~ 2747317 (+) | True | rps25 |
| TU310996 | lncRNA | downstream | 70133 | 2756607 ~ 2760152 (+) | True | G262440 |
| TU310997 | lncRNA | downstream | 70596 | 2757070 ~ 2792408 (+) | False | G262440 |
| TU311004 | lncRNA | downstream | 70596 | 2757070 ~ 2791711 (+) | False | G262440 |
| TU310994 | lncRNA | downstream | 71438 | 2757912 ~ 2760152 (+) | False | G262440 |
| XM_026943933.2 | mRNA | upstream | 31429 | 2650654 ~ 2653366 (+) | True | smtlb |
| XM_026943979.2 | mRNA | upstream | 631559 | 1982153 ~ 2053236 (+) | True | pcdh1a |
| XM_026943948.2 | mRNA | upstream | 811653 | 1870659 ~ 1873142 (+) | True | avd |
| XM_034312268.1 | mRNA | upstream | 858473 | 1816565 ~ 1826322 (+) | False | fgf18b |
| XM_026943904.2 | mRNA | downstream | 11770 | 2698244 ~ 2711113 (+) | False | LOC113544866 |
| XM_026943903.2 | mRNA | downstream | 11770 | 2698244 ~ 2710882 (+) | True | LOC113544866 |
| XM_034312657.1 | mRNA | downstream | 34876 | 2721350 ~ 2728418 (+) | True | slc37a4b |
| XM_026943763.2 | mRNA | downstream | 34876 | 2721350 ~ 2728418 (+) | False | slc37a4b |
| XM_034312856.1 | mRNA | downstream | 57922 | 2744396 ~ 2747268 (+) | False | rps25 |
| XR_004579857.1 | other | upstream | 337410 | 2343661 ~ 2347385 (+) | True | LOC117599403 |
| XR_004579765.1 | other | upstream | 1265306 | 1414504 ~ 1419489 (+) | False | ponzr2 |
| XR_004579764.1 | other | upstream | 1265360 | 1414504 ~ 1419435 (+) | False | ponzr2 |
| TU309863 | other | upstream | 1447663 | 1205991 ~ 1237132 (+) | True | G261503 |
| TU309774 | other | upstream | 1572517 | 1101789 ~ 1112278 (+) | True | vamp2 |
| TU311007 | other | downstream | 109074 | 2795548 ~ 2817258 (+) | False | pcp4a |
| TU312620 | other | downstream | 2391407 | 5077881 ~ 5080617 (+) | False | triap1 |
| TU313203 | other | downstream | 3322326 | 6008800 ~ 6011902 (+) | True | G264336 |
| TU313925 | other | downstream | 4380397 | 7066871 ~ 7082441 (+) | True | G264948 |
| TU313944 | other | downstream | 4429586 | 7116060 ~ 7118616 (+) | False | ddx55 |
