Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU310987 |
| length | 570 |
| lncRNA type | sense_over |
| GC content | 0.50 |
| exon number | 5 |
| gene id | rps25 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 2744396 ~ 2747317 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU310961 | lncRNA | upstream | 57954 | 2684795 ~ 2686474 (+) | True | G262412 |
| TU310960 | lncRNA | upstream | 62713 | 2680943 ~ 2681715 (+) | True | G262411 |
| TU310957 | lncRNA | upstream | 70667 | 2673541 ~ 2673761 (+) | True | G262408 |
| TU310955 | lncRNA | upstream | 71855 | 2670723 ~ 2672573 (+) | True | G262407 |
| TU310937 | lncRNA | upstream | 78958 | 2639208 ~ 2665470 (+) | True | G262395 |
| TU310996 | lncRNA | downstream | 9290 | 2756607 ~ 2760152 (+) | True | G262440 |
| TU310997 | lncRNA | downstream | 9753 | 2757070 ~ 2792408 (+) | False | G262440 |
| TU311004 | lncRNA | downstream | 9753 | 2757070 ~ 2791711 (+) | False | G262440 |
| TU310994 | lncRNA | downstream | 10595 | 2757912 ~ 2760152 (+) | False | G262440 |
| TU311225 | lncRNA | downstream | 239158 | 2986475 ~ 2986675 (+) | True | G262637 |
| XM_034312657.1 | mRNA | upstream | 16010 | 2721350 ~ 2728418 (+) | True | slc37a4b |
| XM_026943763.2 | mRNA | upstream | 16010 | 2721350 ~ 2728418 (+) | False | slc37a4b |
| XM_026943904.2 | mRNA | upstream | 33315 | 2698244 ~ 2711113 (+) | False | LOC113544866 |
| XM_026943903.2 | mRNA | upstream | 33546 | 2698244 ~ 2710882 (+) | True | LOC113544866 |
| XM_026943933.2 | mRNA | upstream | 91062 | 2650654 ~ 2653366 (+) | True | smtlb |
| XM_026943976.2 | mRNA | downstream | 20235 | 2767552 ~ 2782425 (+) | True | igsf5a |
| XM_026943916.2 | mRNA | downstream | 48174 | 2795491 ~ 2817263 (+) | True | pcp4a |
| XM_034312665.1 | mRNA | downstream | 282957 | 3030274 ~ 3062807 (+) | True | gdpd5a |
| XM_026943624.2 | mRNA | downstream | 282957 | 3030274 ~ 3062188 (+) | False | gdpd5a |
| XM_034312666.1 | mRNA | downstream | 282957 | 3030274 ~ 3062188 (+) | False | gdpd5a |
| XR_004579857.1 | other | upstream | 397043 | 2343661 ~ 2347385 (+) | True | LOC117599403 |
| XR_004579765.1 | other | upstream | 1324939 | 1414504 ~ 1419489 (+) | False | ponzr2 |
| XR_004579764.1 | other | upstream | 1324993 | 1414504 ~ 1419435 (+) | False | ponzr2 |
| TU309863 | other | upstream | 1507296 | 1205991 ~ 1237132 (+) | True | G261503 |
| TU309774 | other | upstream | 1632150 | 1101789 ~ 1112278 (+) | True | vamp2 |
| TU311007 | other | downstream | 48231 | 2795548 ~ 2817258 (+) | False | pcp4a |
| TU312620 | other | downstream | 2330564 | 5077881 ~ 5080617 (+) | False | triap1 |
| TU313203 | other | downstream | 3261483 | 6008800 ~ 6011902 (+) | True | G264336 |
| TU313925 | other | downstream | 4319554 | 7066871 ~ 7082441 (+) | True | G264948 |
| TU313944 | other | downstream | 4368743 | 7116060 ~ 7118616 (+) | False | ddx55 |
