RNA id: TU311225


Basic Information

Item Value
RNA id TU311225
length 201
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G262637
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 2986475 ~ 2986675 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgttacagaaaaatgtttgtatgtcagtaaagaaagcagcagattacataagagacacttttcagacaaaaaacataatgaaggctgctgggtttcgctgcagaaataagaagcgagtcgacagtcaaagtctccagaagaactgtggctgcttctgcaagatgctcagtaacacttccagctcatttccttataaaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310997 lncRNA upstream 194067 2757070 ~ 2792408 (+) False G262440
TU311004 lncRNA upstream 194764 2757070 ~ 2791711 (+) False G262440
TU310996 lncRNA upstream 226323 2756607 ~ 2760152 (+) True G262440
TU310994 lncRNA upstream 226323 2757912 ~ 2760152 (+) False G262440
TU310987 lncRNA upstream 239158 2744428 ~ 2747317 (+) True rps25
TU311260 lncRNA downstream 79481 3066156 ~ 3067730 (+) True G262662
TU311264 lncRNA downstream 80511 3067186 ~ 3068928 (+) True G262663
TU311279 lncRNA downstream 154343 3141018 ~ 3141616 (+) False nrip1b
TU311351 lncRNA downstream 202677 3189352 ~ 3194482 (+) True G262741
TU311347 lncRNA downstream 203261 3189936 ~ 3238817 (+) True G262737
XM_026943916.2 mRNA upstream 169212 2795491 ~ 2817263 (+) True pcp4a
XM_026943976.2 mRNA upstream 204050 2767552 ~ 2782425 (+) True igsf5a
XM_034312856.1 mRNA upstream 239207 2744396 ~ 2747268 (+) False rps25
XM_034312657.1 mRNA upstream 258057 2721350 ~ 2728418 (+) True slc37a4b
XM_026943763.2 mRNA upstream 258057 2721350 ~ 2728418 (+) False slc37a4b
XM_034312665.1 mRNA downstream 43599 3030274 ~ 3062807 (+) True gdpd5a
XM_026943624.2 mRNA downstream 43599 3030274 ~ 3062188 (+) False gdpd5a
XM_034312666.1 mRNA downstream 43599 3030274 ~ 3062188 (+) False gdpd5a
XM_026943625.2 mRNA downstream 43599 3030274 ~ 3062188 (+) False gdpd5a
XM_026943910.2 mRNA downstream 129494 3116169 ~ 3141753 (+) True nrip1b
TU311007 other upstream 169217 2795548 ~ 2817258 (+) False pcp4a
XR_004579857.1 other upstream 639090 2343661 ~ 2347385 (+) True LOC117599403
XR_004579765.1 other upstream 1566986 1414504 ~ 1419489 (+) False ponzr2
XR_004579764.1 other upstream 1567040 1414504 ~ 1419435 (+) False ponzr2
TU309863 other upstream 1749343 1205991 ~ 1237132 (+) True G261503
TU312620 other downstream 2091206 5077881 ~ 5080617 (+) False triap1
TU313203 other downstream 3022125 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 4080196 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 4129385 7116060 ~ 7118616 (+) False ddx55
trnar-ccu_6 other downstream 4381805 7368480 ~ 7368552 (+) True trnar-ccu_6

Expression Profile