RNA id: TU311380


Basic Information

Item Value
RNA id TU311380
length 3011
lncRNA type intronic
GC content 0.37
exon number 2
gene id G262757
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 3325899 ~ 3328969 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttattttaataaatataaacgtTTTTCCCATTGTATCACCTCATTAGTAGTGAGTAAGTTTTGATTTCTGTCAAATGATCAGGAAACACGGTGACTCTTGTCCCGAGTAGTGTGAGATCTTGTTACAATAAGCACGTCAATATTTTCAGTTAAATGTCTTAAAATCATGCCCCATCATTTAAACTACAAAAGTGTTTtgacattctttaaaaataataatttaattgtaCTATAAATGAAAGTTTTATTCACACTGATAGTCTTGttcaaaatggatttaaaaaataaaaagatggaAGTAATAGATAAAATTCCATTACACGATATTTTCAAAGCACTTATTTCGTTTTTATGGCTCTATTTTATACAAAGATCCAGAAGTAAtgctatatatactatatacatgtGTAAGTTTAATATTTGAACGGCTGCATCTAGACATGTGCTGAATATCTTTTATACAATATCCAATAATACAATACAGAAATGCACAATATTGTTATCATGGACAGTTGAAAAACTTGTGCGCACCCGTTGGTTGAGAGTTTCCTGCAAAtggaataatttattaataatgtagtATTATAGAAAAGGcaatatttattgtgtttaatattGGCGCATGTCTAGTTGCATCATAGCTTTGGGAATGAACGAGACGGAGGATTAGCATGGACATGAAAGCTAATCAAGTGTGTGTGCCGAGTTGAAGCCCTGTATGTGTTGCCCTGATGTGCAATGGCATTTCGACTCTGGAGCGTAAGATATGCAAGTTTCCCTCGTTGCTCTCGCTTCCTGTTGAACCGACATACAGGTGCCTGAACAAACCATTTTGTTATTTAGATGATTTTAATATCTGTTTTAAtatctgcttttgtttttagcGTCATATTTGAATACTTGCTTCAGAAACAATCAGTGCCATGATTCCTTGTCTTTCGCTGAGCAGTCCagtctgtgttttcttttactttgtAATGTATGGGGCTgtgattttctgatttttcttgTTCTTACCGAGCAGCCACACTTTTAGATGTCGCTGTCTGCGAGATGATGTTTGATCATTTTAGGCTAGTGTTTGATTAACAGTCTAAACACTAAATCGCTAAATCACTAAATCCATCTTCAAGCCTTTGGCACAgacttttttaattactgaatCAATTTTCTTATCCGTGTCAAATAATTAGCTTTCAGCAGTATGCTAAATaagctcttttatttatttcccatgCAAACAAAGTAGACTTTAACTTTTAACACCTTGTTTGGGGGAATGcacattttagaaaatgttttatgtagctGAACTTGtttaaaagattatttttaaagtcaTGTTGAATTGAGTAGGTTGCTGTCGGCCGAGTTTGCTATGTAATGGCTGGAGGAgatgtctttgtttttattttttattttttggtgagCTGTAGTTGGCAGGCACAAAAGGGACAAACGGATTTACTTGTGGCTCAGGGGTGGATAGATGTTAATTTTATTAGCTAATCCGCAGGCAAAGCTCCAGTGTCCTAGTGTCATGTTTTGGTAGCCTGGAACTTCACTGACCAgactaaaaagtggtagctcatgtaatgtaatctaatgtaatgtaattaattgTAGCTACGTACCAAATTAAACTATCGTATAAGTCAAAAACTATCCTATAAGTAAATAaggagttttttctttctctggatGCTGAACCTGCTTTCTCTGGGCAACCgcgaataaaataataaaaaaaacaaatagcccGGACACAATATCTGCTTGTTCCaagatttgtccacccctgtggCTGTTAAGCCTTTGATTAACTACCGATCTGTTTGTTctgtgcttggattggattttGCCTCTTGGATAAGTGTGTCTGTTAAACAAATACATGTGAAAGGCATCAATGGAAAATCTTTACAGGAGACATGGCATTATAACACACAGTACTGTTCAAATATTTGAGGCTTTTTGCAGCATGAAGACAGACGACATGATAGTGAAAAGTCGAAAGGGATGCACTGATCCCTTTATGAACACTTGAGATGTATCTCGATACTGAAACTGAAGTTACCCGATACCTGTATTAAGCTAATGGCACACTTACGAAATAACAATTCTGAGCTACTTGACAAACAAGCGGCAttgtcactgtgactgagacGACTCTCACCTAGCTGATTTAGGACATGCATTCAAGACATGTATTAGCAGTATTAGCAGTTAGAGGATTGGATTTAGGTTGCAAAACGTCAAACCTGATGTGCATCCAGCATGTCAGATCAGTATCTTTCATCTGTATTGTAGACGTGTattttagtgctccaaatatccatttttttaaaattaattacaaaccCTCTCACTATGTCCCTGGAAACTTTGGCGGAAAAtgtcagcactgtcagcatggtgtacGAATTTCATATTCGCTTATATCCCTGCGTCCCATGCAGAAAGCTCCATGCAGAAGGAATATGCAAAGCGAATTCCCAGTGCTCCTTTCTTGGATTATATGTGAGATGAAAATGCTGGATTTCTGTCCTGTTCCTTGTTTGGTTAAGGAGGTGTGAGGTGTCCATGGCTATAAGggaagtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgtgagagagagagagagaggtgtgtaaAGATGATGCTTACTGTTCCAGTGTCATATCAGGTAGATATCCCCGTGCCACGTCACACCAACTGCCAAGTCTGACTTAACATGTCCTCTCCATGTCGTCTCGTTTGATCCGTATGCACACTGACGCCGTTGGAATCCTtgaggcttttttgtttttggttttttttgtttgtttgttttttaaagagaatTCTTGTGCTCTGTAATTGGAATTGTGAAACTGTCTGGATGTGGTTATTTCAGACAAGCATGAGAATGTCTTTCAGCTTCCACAACCATGTAAAACATTCAAAAGTGTTGTCACAAATTTCTGTCCCCA

Function

GO: NA

KEGG:

id description
ko04621 NOD-like receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311358 lncRNA upstream 58046 3234562 ~ 3267853 (+) True G262747
TU311347 lncRNA upstream 87082 3189936 ~ 3238817 (+) True G262737
TU311351 lncRNA upstream 131417 3189352 ~ 3194482 (+) True G262741
TU311279 lncRNA upstream 184283 3141018 ~ 3141616 (+) False nrip1b
TU311264 lncRNA upstream 256971 3067186 ~ 3068928 (+) True G262663
TU311385 lncRNA downstream 54184 3383153 ~ 3407893 (+) True G262762
TU311424 lncRNA downstream 71896 3400865 ~ 3419792 (+) True G262800
TU311432 lncRNA downstream 95075 3424044 ~ 3441594 (+) True G262807
TU311381 lncRNA downstream 139961 3468930 ~ 3576137 (+) False msi2a
TU311477 lncRNA downstream 293838 3622807 ~ 3623372 (+) True G262852
XM_026943792.2 mRNA upstream 125 3318106 ~ 3325774 (+) True LOC113544811
XM_026943825.2 mRNA upstream 146961 3150466 ~ 3178938 (+) True usp25
XM_034312675.1 mRNA upstream 146961 3150467 ~ 3178938 (+) False usp25
XM_026943828.2 mRNA upstream 147641 3150479 ~ 3178258 (+) False usp25
XM_026943910.2 mRNA upstream 184146 3116169 ~ 3141753 (+) True nrip1b
XM_026944049.2 mRNA downstream 321980 3650949 ~ 3654016 (+) True LOC113544950
XM_026944047.2 mRNA downstream 326688 3655657 ~ 3659058 (+) True LOC113544949
XM_034312479.1 mRNA downstream 502390 3831359 ~ 3891808 (+) True myo18aa
XM_034312481.1 mRNA downstream 646711 3975680 ~ 4041056 (+) False sez6a
XM_034312480.1 mRNA downstream 646711 3975680 ~ 4039784 (+) True sez6a
TU311007 other upstream 508641 2795548 ~ 2817258 (+) False pcp4a
XR_004579857.1 other upstream 978514 2343661 ~ 2347385 (+) True LOC117599403
XR_004579765.1 other upstream 1906410 1414504 ~ 1419489 (+) False ponzr2
XR_004579764.1 other upstream 1906464 1414504 ~ 1419435 (+) False ponzr2
TU309863 other upstream 2088767 1205991 ~ 1237132 (+) True G261503
TU312620 other downstream 1748912 5077881 ~ 5080617 (+) False triap1
TU313203 other downstream 2679831 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 3737902 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 3787091 7116060 ~ 7118616 (+) False ddx55
trnar-ccu_6 other downstream 4039511 7368480 ~ 7368552 (+) True trnar-ccu_6

Expression Profile