RNA id: TU311432


Basic Information

Item Value
RNA id TU311432
length 3100
lncRNA type intronic
GC content 0.42
exon number 2
gene id G262807
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 3424044 ~ 3441594 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAAGTTAGTCTTTCCAGATCTCGTCATATTCGTGACACTTTTGAATATTGGCCTGAATATTGGcctgtgtgtttgctgaaaggtcacatgaccagatatATACATTGTCTCAATAATACTGTCAGTATATCCATAAACATTACATCCATAATGTTGGAATTGCCCAAACCTAGAAAGAATCCCTAATCGCAGAGATATACTTTATATTTCTTGTTGTGTAGGTGACGTTATGTAGATGACAGACAGACTCTGCTTTCTGTATTCTCCTGAAACTGTTCAGACTTTTCAAGAATTTTAGACTTCTAGCTTTGAGGCATGTGATTCACAGGCTTGTATTTCCAAGGATTTTGAGTCATAACGACTCTTCACGATAAACTGATTAATTAGCGAAAGTGTTCTGTTTGCACTGAATTATGAGCTCGACATTTAGGTGTTTATGACAGATCTGAGGCTCAGGCTGAGACTCTCTGCCTCAGACTTTTCTGCTTTGTTTCTTTccgtctgtccatctctgtgcACATACAGGGTTAATATCTCTCACGTTAGCTGGATCATTGCAGTAATTTTCAGCCGCCAGCCTCCGTTTCTTGTCCTCAGTCATGGAGGTAATCGCTCTGACAGCTGGTTTGTGAAGACTGGCTCTGTTCCTGCGTATGTATGAGAGAGAATCAGCTTTTGTCCTGTTCCATCATTGACCTGGAAAAGCCAGTGGGCAGGGCCggagatgagagagagggagcgagagcgCCCTGCTAAAACACTCGTGTCGATTTGACCTTTAGTAAGACAGAGCGAATGTGAAAGAAAGTGGCTGGATCTGTTCGGATGTTTCCTCCCATGTGATCAGCGTGATGTGTATCTGACAGGTGCTCATGTTCTCTGCATCACGTGTTTTGGCTGTGTCTTGCTCTCAGCTTAAGCAAATGAGTATTTCACAAATCAAATCAGGAGCATTTACTGAGATTAGCGAATGCGTTTTACAGATTATAAAGCATAGGTTTTTCTAAATATTAGCTCTGGACTACAGCAGATAAACATATGCTATCATTTTGACAGTAACCTAACATTATCATCTGCTtatcaaataaatttaaatacaaacataaaaaaaaaaagtaagtaaacaGTGGCATCACAAAGTTGTATGGTGTAAGCAAGGCTAAAGTGCTACATGAGTGAAGTCAttagcactttttttaaatgaaatatgttgaacattatttagattttgtaaaatttgttttgtttggattATAAACCAGCGCTCTGTTAAGGTAAGTTAAGTTGGTTGTACGATTAACATCAGGCCCACAGATTTCAAACAAGACCTTTTGTCCAATCATACTGATTTGTTATTCAGTCTCTAAACCAATCAGAGCGTGTGACCAAAAGATAGGGGTAGGCATAGGATTAATTAGCTACCGTAATCATTATGCCACTTGAAGGTCTTCACAAGGataggaaaatgtgtgtgtgtgtgagtgagagtgagtgagtgactgtgtgcttgtgtgttccTTGTTGCACATGTGTGGATGCCAAGGAAGCACAGAGttgagatcacacacacacacacacacacacacagtctgtgtgtttctgctggGGTGTCTCCTGCAGCTGCTCCTGAGAGGGGATTTTAGCAAAATTCGTTCTGTTccaaagtacacacacacacacacacacacacacacacactcatttcccTTATCACACCTGATTCCATCTGACAAAAGcctttattttcttaatatttttgtatCCGTCGAAGCCGACTGAAGTCTATATTCTCCCCATCTGTCACATCTGttcctttctctcctctccttgCCTTTtgcgatacacacacacacacacacacacacacacacgcaggcaggcaggcagcgTTCTGGCTCACAAGAGTTTTAATTCTGCTCTGGCGCCACGGAAACCGCTCCATAACCAATCAAAAGGGCTTTTTAATGGAACCCCTGGAGAGCGGGACACACAGCAGCGTCATGGCTAACCTTTCAATGTTCTCTGTGACTCAGAGGagccagcacaacacacacacacacacacacaaacatcctcCAACACCAAAGCCTATTCTGGATCTATATCAGTGATAGAGGTTCTAAAACCACTCATTGATCCTTTTGCTCTTAATCCCGTCTCCTGGGATGCTATGTGTCTGAGTTTTGTGGTTCCTGTTGACATTGTGtatatgtactgtgtgtgtgtgcgcgttggTTTGGGCGGGCCGTTGATGCAGTGAGGAGCTAATCTCCATTAGCTTGAACAGACCGCTTCATTAACCAAGCCGACCTCTGTGCCTCTTCTCGGCTCCCTTgctagtctctctctcacacacatatatacacacatacacacacacacctgacagaTTGTCAGTGATGTCACATCCAATCTTGTCTCTGTTCTGATGCAAAGGtcctcttctgtctgtctctgctgtCCACTTTCCACAAGAGAAACTTAAAATCTCACTGTTAGAGATTGTTTTaagcattgattttttttttctaattaggTTTATGTTGGTCTTGTGGACAAAACATGCAGGACGAAGTGCAATTATCTTTTTGAGTCTGAACCAATCTCCAGACGGGGCTGAATCAATGGTCACAAGTTTCCATCCTGCTTTAATCTGATTCAGACCCTGTTGAAAGTCAGGTCCATGGGAACCAAATACTCCCAGAAACTCAAAGGTGGGAAAGAAAGAAGTGGGGACATCAGATTGGCTGCTTCCTTTATTTTTAGATTGATCcactttgttttgaaaacgGTGTAAagagttttgtatttttgtgagTCAGAGCTGTAACGGCAGCTTTGCAGTGATTAACTGGCCCtgtaataagtaaggaataaagcacaatgggccatgctgttataggaatataatccaGGCTGTTTCCACTCCAGAgaggattattttcctctaacagcaagGCCTGAAATCTTTcttcttatagcacagcaagtTGCCAACGATGACcagatttaatttattaatgaacatcacGTTGtggtttttaaccatttaaatgTTGTGAACAATGACaagacaagttatttcctCtaatctttctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311424 lncRNA upstream 4252 3400865 ~ 3419792 (+) True G262800
TU311385 lncRNA upstream 16151 3383153 ~ 3407893 (+) True G262762
TU311380 lncRNA upstream 95075 3325899 ~ 3328969 (+) True G262757
TU311358 lncRNA upstream 156191 3234562 ~ 3267853 (+) True G262747
TU311347 lncRNA upstream 185227 3189936 ~ 3238817 (+) True G262737
TU311381 lncRNA downstream 27336 3468930 ~ 3576137 (+) False msi2a
TU311477 lncRNA downstream 181213 3622807 ~ 3623372 (+) True G262852
XR_004579792.1 lncRNA downstream 190667 3632261 ~ 3636665 (+) True LOC113544951
TU311482 lncRNA downstream 191792 3633386 ~ 3635842 (+) False LOC113544951
XR_004579791.1 lncRNA downstream 193125 3634719 ~ 3636665 (+) False LOC113544951
XM_026943792.2 mRNA upstream 98270 3318106 ~ 3325774 (+) True LOC113544811
XM_026943825.2 mRNA upstream 245106 3150466 ~ 3178938 (+) True usp25
XM_034312675.1 mRNA upstream 245106 3150467 ~ 3178938 (+) False usp25
XM_026943828.2 mRNA upstream 245786 3150479 ~ 3178258 (+) False usp25
XM_026943912.2 mRNA upstream 282291 3122007 ~ 3141753 (+) False nrip1b
XM_026944049.2 mRNA downstream 209355 3650949 ~ 3654016 (+) True LOC113544950
XM_026944047.2 mRNA downstream 214063 3655657 ~ 3659058 (+) True LOC113544949
XM_034312479.1 mRNA downstream 389765 3831359 ~ 3891808 (+) True myo18aa
XM_034312481.1 mRNA downstream 534086 3975680 ~ 4041056 (+) False sez6a
XM_034312480.1 mRNA downstream 534086 3975680 ~ 4039784 (+) True sez6a
TU311007 other upstream 606786 2795548 ~ 2817258 (+) False pcp4a
XR_004579857.1 other upstream 1076659 2343661 ~ 2347385 (+) True LOC117599403
XR_004579765.1 other upstream 2004555 1414504 ~ 1419489 (+) False ponzr2
XR_004579764.1 other upstream 2004609 1414504 ~ 1419435 (+) False ponzr2
TU309863 other upstream 2186912 1205991 ~ 1237132 (+) True G261503
TU312620 other downstream 1636287 5077881 ~ 5080617 (+) False triap1
TU313203 other downstream 2567206 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 3625277 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 3674466 7116060 ~ 7118616 (+) False ddx55
trnar-ccu_6 other downstream 3926886 7368480 ~ 7368552 (+) True trnar-ccu_6

Expression Profile