RNA id: TU311498


Basic Information

Item Value
RNA id TU311498
length 1896
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G262872
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 3665524 ~ 3667443 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atttcagcaaaaaagtgtaatttataAAGCTAGATAGAACTCCATGGCTGTAGCAATGTGATTTTGGGTCATACATAAATGTTTTAGTCACAGTCTTGGAGGTTAATTTTTGGttgattttctgtttaaaatatgattaaagaCTAGGATTTGCCTACatactttctttatttcatgATGCACTACAGTATTACCTTATCAACTGTGTGCACCGTTAgcaagaaaaaactgaaataattaaataaaagggCAAAGTGCCATgagttgttgtgttttattctacaGGCTTGAAGGAACAGCGAGATGAAGCTCAGCGTGGTGTTCTTGGCTGTAATGTGCAGCTTGGTGGGACTGGGTGTTTCACCTCCACCAAACCAAAACACCACTACCACCATGACTTCTTCCATATCAACCATTTTAAATGCATCTCTCTCTGGATCAGGTTCTGGTGGATCCAATGCACATTCAAGCACCAGTGGGGCTCGGTCCACTATCTTCACCTCTTCCGGTGGAAATGTTCTGCTCTTTCTCACCGTGTCCATTGTCCTCTACATTCCACTGCTGATGAAGTAGTGGCTCGGACACAAACCGGATATCTCTCACACCAGCGCGCCAAGTAGTGAATGCTCCAAACCCTCAGATCACCTAATAAGAATCTAATGACTGAGTAGACTGGGTGGATAGAATACGGTTTTGTTTCATTCTGAATTAAAAGTCAATACAGCAACTTTCTTTCTCCAGTAACGGGAATGTGCTTTACTATCCTTTGTATTTATATGCTCTTTTAATGTGCTTAAACTAAATGTTAACACACAACTAAGAATTTAGAGTGCTGTAACTGCTGAACTTGTTGATGCTGCTTATGTACTGTTCTTTCATAACAAGTCCATCGATTCTTCTTATCACCACAAAGAACACAAGAGCTTGGGAGAACCAGTGGAAATTTCTAAGGAGCATTGCTAGTCAACTGAACAACCATCAACATCAGCGCATCCAAAGGAACCTTATCAAATGCCTATCATGATGTAAACTGATGGAGATGGTTGCATGCTTTCCGTACAGTTATGACAATGGAAGTTTGGTTATTTCAAAAGAACGTATCATGTCTATATAGTTTCTTTAAGTTAAAGGTCATGTAGATGGACCAAAATCTGGTTTATATGCAGCTTAATCAAACACGAGACACACAAAATGAATGTGGTCGATACATGATAAGATACCAAGTCCATTTGTAGAAATGAAAGGTGGAAAAAttctgcttcttttctttttttgtgttcatCATCCTCACCATTCTAGTGGCTCAGACACACTAGCTATCTATCAAACCTGCTCAGCAGTTAGTCAATGCCCCAAATCTTCATATCAGCTGATAAGAATCTAATAACTGAGTAGATTGGGTTGATGGAATCCTTCTCTGtactTTTCGGGTTCTGAACTTGATTAGAATGTCTACATTTGGCTTTTAGTCTCACAATATTGGTATGCAATAAATACTAGCATGAAAAAGAGTTTTGTAACTCTGAAACTCACTGTCCTGTTGTTCTTTCGCATCAGTAAACTTTCTTAAGTCTAAAGCCtcaggggttttttttgtttgttttaatccaTCTCTCATTCTCAGAGATCTTTAGTCATTTGGGAAATTTACTAAGAGCATATCTGCatctaaaaaaacattaacatgtcTTTATATCATTAAAATAACTACTTGTACTTAATTGGTTGGCTGTAAATATTTGCTTTCCTTACATTCTTACCTGTGGGGTTCCTCAAGGATCCATTCTAGGTCCTGACCatttctttttccccattctcaGTTCATTCTATGCAGATGATTTACAGCTGTATCTATTGCTAAAACTAAATAATTTGTtcctcgaaaaaaaaaaaatt

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579792.1 lncRNA upstream 28859 3632261 ~ 3636665 (+) True LOC113544951
XR_004579791.1 lncRNA upstream 28859 3634719 ~ 3636665 (+) False LOC113544951
TU311482 lncRNA upstream 29682 3633386 ~ 3635842 (+) False LOC113544951
TU311477 lncRNA upstream 42152 3622807 ~ 3623372 (+) True G262852
TU311381 lncRNA upstream 89387 3468930 ~ 3576137 (+) False msi2a
TU311526 lncRNA downstream 27608 3695051 ~ 3699577 (+) True G262894
TU311586 lncRNA downstream 122698 3790141 ~ 3792507 (+) True G262946
TU311683 lncRNA downstream 518316 4185759 ~ 4186254 (+) True G263025
TU312167 lncRNA downstream 618534 4285977 ~ 4286206 (+) True G263439
TU312320 lncRNA downstream 830756 4498199 ~ 4499244 (+) True G263566
XM_026944047.2 mRNA upstream 6466 3655657 ~ 3659058 (+) True LOC113544949
XM_026944049.2 mRNA upstream 11508 3650949 ~ 3654016 (+) True LOC113544950
XM_026943793.2 mRNA upstream 89387 3253316 ~ 3576137 (+) True msi2a
XM_026943795.2 mRNA upstream 89387 3253316 ~ 3576137 (+) False msi2a
XM_026943794.2 mRNA upstream 89387 3253317 ~ 3576137 (+) False msi2a
XM_034312479.1 mRNA downstream 163916 3831359 ~ 3891808 (+) True myo18aa
XM_034312481.1 mRNA downstream 308237 3975680 ~ 4041056 (+) False sez6a
XM_034312480.1 mRNA downstream 308237 3975680 ~ 4039784 (+) True sez6a
XM_034312483.1 mRNA downstream 338890 4006333 ~ 4039784 (+) False sez6a
XM_034312482.1 mRNA downstream 338906 4006349 ~ 4039784 (+) False sez6a
TU311007 other upstream 848266 2795548 ~ 2817258 (+) False pcp4a
XR_004579857.1 other upstream 1318139 2343661 ~ 2347385 (+) True LOC117599403
XR_004579765.1 other upstream 2246035 1414504 ~ 1419489 (+) False ponzr2
XR_004579764.1 other upstream 2246089 1414504 ~ 1419435 (+) False ponzr2
TU309863 other upstream 2428392 1205991 ~ 1237132 (+) True G261503
TU312620 other downstream 1410438 5077881 ~ 5080617 (+) False triap1
TU313203 other downstream 2341357 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 3399428 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 3448617 7116060 ~ 7118616 (+) False ddx55
trnar-ccu_6 other downstream 3701037 7368480 ~ 7368552 (+) True trnar-ccu_6

Expression Profile