Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU312488 |
| length | 1456 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 1 |
| gene id | G263716 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 4885346 ~ 4886801 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0031514 | motile cilium | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU312487 | lncRNA | upstream | 619 | 4883327 ~ 4884727 (+) | True | G263715 |
| TU312498 | lncRNA | upstream | 8841 | 4876245 ~ 4876505 (+) | True | G263724 |
| TU312395 | lncRNA | upstream | 109637 | 4721546 ~ 4775709 (+) | True | G263634 |
| TU312366 | lncRNA | upstream | 263856 | 4618066 ~ 4621490 (+) | True | G263612 |
| TU312320 | lncRNA | upstream | 386102 | 4498199 ~ 4499244 (+) | True | G263566 |
| TU312598 | lncRNA | downstream | 136474 | 5023275 ~ 5025508 (+) | True | G263801 |
| TU312774 | lncRNA | downstream | 318194 | 5204995 ~ 5205419 (+) | True | G263953 |
| TU312815 | lncRNA | downstream | 686163 | 5572964 ~ 5573280 (+) | True | G263993 |
| TU312835 | lncRNA | downstream | 780781 | 5667582 ~ 5726945 (+) | True | G264009 |
| TU312825 | lncRNA | downstream | 816042 | 5702843 ~ 5704831 (+) | True | G264002 |
| XM_026943832.2 | mRNA | upstream | 2073 | 4865568 ~ 4883273 (+) | True | rfx3 |
| XM_026943834.2 | mRNA | upstream | 2073 | 4865568 ~ 4883273 (+) | False | rfx3 |
| XM_026943833.2 | mRNA | upstream | 2073 | 4865568 ~ 4883273 (+) | False | rfx3 |
| XM_026943830.2 | mRNA | upstream | 21209 | 4842081 ~ 4864137 (+) | True | glis3 |
| XM_026943920.2 | mRNA | upstream | 316983 | 4546776 ~ 4568363 (+) | False | bmpr1bb |
| XM_026943728.2 | mRNA | downstream | 107905 | 4994706 ~ 5016446 (+) | True | LOC113544783 |
| XM_034312556.1 | mRNA | downstream | 107905 | 4994706 ~ 5016446 (+) | False | LOC113544783 |
| XM_026943877.2 | mRNA | downstream | 171874 | 5058675 ~ 5074781 (+) | True | sgsm1b |
| XM_026943876.2 | mRNA | downstream | 172285 | 5059086 ~ 5074781 (+) | False | sgsm1b |
| XM_026943913.2 | mRNA | downstream | 191052 | 5077853 ~ 5080643 (+) | True | triap1 |
| TU311007 | other | upstream | 2068088 | 2795548 ~ 2817258 (+) | False | pcp4a |
| XR_004579857.1 | other | upstream | 2537961 | 2343661 ~ 2347385 (+) | True | LOC117599403 |
| XR_004579765.1 | other | upstream | 3465857 | 1414504 ~ 1419489 (+) | False | ponzr2 |
| XR_004579764.1 | other | upstream | 3465911 | 1414504 ~ 1419435 (+) | False | ponzr2 |
| TU309863 | other | upstream | 3648214 | 1205991 ~ 1237132 (+) | True | G261503 |
| TU312620 | other | downstream | 191080 | 5077881 ~ 5080617 (+) | False | triap1 |
| TU313203 | other | downstream | 1121999 | 6008800 ~ 6011902 (+) | True | G264336 |
| TU313925 | other | downstream | 2180070 | 7066871 ~ 7082441 (+) | True | G264948 |
| TU313944 | other | downstream | 2229259 | 7116060 ~ 7118616 (+) | False | ddx55 |
| trnar-ccu_6 | other | downstream | 2481679 | 7368480 ~ 7368552 (+) | True | trnar-ccu_6 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | TU444494 | True | 4044 | lncRNA | 0.41 | 2 | CI01000203 | 480650 ~ 485068 (+) |
| tiger barb (Puntius tetrazona) | TU270670 | False | 2065 | lncRNA | 0.40 | 1 | NW_025048054.1 | 1005521 ~ 1007585 (+) |
| mexican tetra (Astyanax mexicanus) | TU234312 | True | 4581 | lncRNA | 0.41 | 2 | NC_035916.1 | 3192896 ~ 3197504 (-) |
