RNA id: TU312825


Basic Information

Item Value
RNA id TU312825
length 1655
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G264002
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 5702843 ~ 5704831 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctccACTGTATTTAGTCAGAAATcctttaaactgaaaaaagaaaaatcaaactCCCTCACTACAGATTTAACaacctatttattatttaatattatttaaatgtctattattttgcttatattttgcctatttattggagccaataatttttttatttttttccctgaactttccacccattttaattaaaactgtcATTAGAGTTGAGTtaaagttgacattatttatgagTATATTTCCCCAGACTATGGGTTTAGAGTGAGTGCTATGAGAGCTTCTATAGTCCACAGTGAATCCTCTAATGTAAGACGCAAACCTCctgaaatgaacattttggtATTTATGTTCAGTAAGTCTGGTAAACGCTTTACAATTGGCAATGCGAATAAaagtacaaatttaaaaaaaaaaaaaatgatgcacaACAATACACTGATTAATGGGTTACTTAGGAAGAAGAATGTTTGTCAACCACACAGGATGATGCGCTCTTCTGAAACATTCAGCAGATAATTTCAACTTGGAAAGAAGTCTTCACGCCCACTTTGTAAGGTGTGGCTTCCCGTCATGGCTCATATAACTATGGTGAAACCACAAAGCGCCAGGATTGTTTAAAGAGCTACGGTGAAGTGCCAAGATCGAATCAGTCACTGCACATGAAAATGGATTTCAAAATTCTTCTGCTGATCCTGTGCATCACCTTCGTCTCAGTCCAAGGTGCCACTCCACGATGCTGTATCAAAACATCTCCAGTCCATAAACAACTGTTGAGCAGAGTGATTAAATTCAGCGTACAAGATCGCAGTGGTGGCTGCGAAACTAAAGCCCTCGTGCTGTATTTCGAGCAGAAGATTTTGTGCGCACCACTGCGGCAATTACCACAACTGGCAAAAGTCAGATCAGTCATAACAGGGCAAGAACATTTCTGAGACGTAACTGAGATCCTGTGTTTTTACTGCCAATATGTCATTCTGCTGATTcgttttcatttacttttttactttcctCATTGCCATAAACCTCATTCTGAATGGTCCTTTCTCATCCAGCTATTGTCAAGCAAAACAGACCCATACATTTCATAAACTtcattactttctttctttttttccccactagatgCTGGTTTTATTTGCTCAAAAATATTTGCGGACTCTTTTACTGTCTCCGCCAATTCTCAGGAAAATAAATCTTGATGTTATTGTGACTGAAAGACCCCTGAGGTTATTAAAAAGGTTTAGAGTGAATGGTTTCAAATGTGtcgataaataaaataatattttaaagtcaTTGTTacgaagcaaaaaaaaataaaaattcaatattGGAAGAAAATGACCTTGACGTACTGATTCACAGACATGTTCACAGGTCATTTCTGAAGGTCAGGTGTAAGACAATAAAATGTGTACAtgtaaaaagataaatattCACCGTTTGTCAAAAAGCTTTCAATTCTTCATTTCAGGAAATATGTTTTAAAGATACGTTTGTGAATTAAAGCACTATAAATGTTAGAGTTTTATCTTTAAACAGCATATTTCTATGCTGGGTTTTTACGCACTGCTGCTCGCCACATTTCTCCAGCTACATGTTATCATTTCTCAAGAAAAAAGTGACAGATGTAATTCACTAATCCTATTCAATAAACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312815 lncRNA upstream 129563 5572964 ~ 5573280 (+) True G263993
TU312774 lncRNA upstream 497424 5204995 ~ 5205419 (+) True G263953
TU312598 lncRNA upstream 677335 5023275 ~ 5025508 (+) True G263801
TU312488 lncRNA upstream 816042 4885346 ~ 4886801 (+) True G263716
TU312487 lncRNA upstream 818116 4883327 ~ 4884727 (+) True G263715
TU312899 lncRNA downstream 217479 5922310 ~ 5926306 (+) True G264056
TU313350 lncRNA downstream 469483 6174314 ~ 6174692 (+) True G264424
TU313337 lncRNA downstream 489243 6194074 ~ 6194681 (+) False LOC113544903
TU313352 lncRNA downstream 490097 6194928 ~ 6195142 (+) True G264426
TU313353 lncRNA downstream 503159 6207990 ~ 6209011 (+) True G264427
XM_034312602.1 mRNA upstream 1665 5664084 ~ 5701178 (+) True LOC113544765
XM_034312603.1 mRNA upstream 1665 5664084 ~ 5701178 (+) False LOC113544765
XM_026943670.2 mRNA upstream 42701 5652719 ~ 5660142 (+) True wu:fb59d01
XM_026943897.2 mRNA upstream 53389 5645871 ~ 5649454 (+) True nxnl2
XM_026943935.2 mRNA upstream 63262 5627430 ~ 5639581 (+) False LOC113544883
XM_034312438.1 mRNA downstream 12284 5717115 ~ 5722706 (+) True setd9
XM_034312437.1 mRNA downstream 13162 5717993 ~ 5722706 (+) False setd9
XM_026943849.2 mRNA downstream 13383 5718214 ~ 5722706 (+) False setd9
XM_026943660.2 mRNA downstream 37400 5742231 ~ 5759098 (+) True grk5
XM_026943662.2 mRNA downstream 37400 5742231 ~ 5759098 (+) False grk5
TU312620 other upstream 622226 5077881 ~ 5080617 (+) False triap1
TU311007 other upstream 2885585 2795548 ~ 2817258 (+) False pcp4a
XR_004579857.1 other upstream 3355458 2343661 ~ 2347385 (+) True LOC117599403
XR_004579765.1 other upstream 4283354 1414504 ~ 1419489 (+) False ponzr2
TU313203 other downstream 303969 6008800 ~ 6011902 (+) True G264336
TU313925 other downstream 1362040 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 1411229 7116060 ~ 7118616 (+) False ddx55
trnar-ccu_6 other downstream 1663649 7368480 ~ 7368552 (+) True trnar-ccu_6
trnam-cau_30 other downstream 1663731 7368562 ~ 7368633 (+) True trnam-cau_30

Expression Profile