RNA id: TU313203


Basic Information

Item Value
RNA id TU313203
length 378
RNA type TUCP
GC content 0.54
exon number 2
gene id G264336
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 6008800 ~ 6011902 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTGCAGAAGAATCTGAACCGGCTGCCGGTGCAGGTGCAGATGCTGCAGACGCAGATGCTGCAGATGCTGCAGATGTTGCAGACGCAGGCGCTGCTGTTGGTTGTTCACTCTCTGCAGGCTGCACTTCGGCTTCATTTCCATCTGCAGACGCTGCACTTGCAGGTACTTGCTCTGTGGACGAAGCTTCAGTGGATATCGATTCCTGTGCGGGTTCTGCAGGTCCTGCAATTTCTGGCTGCGATTGAACTTCGATTTCCTCCACTACAGGGGGAACATCTCGGGCTTCTTCGACCAGCTTCATcgccctctctctgtcctgcacTGCCAGCTTCTCGAACAACTTAAAGGTGGCAGTAATGAGCTAACTCATTTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312899 lncRNA upstream 82494 5922310 ~ 5926306 (+) True G264056
TU312835 lncRNA upstream 281855 5667582 ~ 5726945 (+) True G264009
TU312825 lncRNA upstream 303969 5702843 ~ 5704831 (+) True G264002
TU312815 lncRNA upstream 435520 5572964 ~ 5573280 (+) True G263993
TU312774 lncRNA upstream 803381 5204995 ~ 5205419 (+) True G263953
TU313350 lncRNA downstream 162412 6174314 ~ 6174692 (+) True G264424
TU313337 lncRNA downstream 182172 6194074 ~ 6194681 (+) False LOC113544903
TU313352 lncRNA downstream 183026 6194928 ~ 6195142 (+) True G264426
TU313353 lncRNA downstream 196088 6207990 ~ 6209011 (+) True G264427
TU313354 lncRNA downstream 206607 6218509 ~ 6283930 (+) True G264428
XM_026944020.2 mRNA upstream 97771 5903105 ~ 5911029 (+) True pargl
XM_026943799.2 mRNA upstream 166250 5836657 ~ 5842550 (+) True LOC113544817
XM_026944010.2 mRNA upstream 173275 5828124 ~ 5835525 (+) True ccar2
XM_034312327.1 mRNA upstream 202303 5797141 ~ 5806497 (+) True ykt6
XM_026943749.2 mRNA upstream 202303 5797141 ~ 5806497 (+) False ykt6
XM_026943898.2 mRNA downstream 89 6011991 ~ 6015837 (+) True mrps24
XM_026943637.2 mRNA downstream 19078 6030980 ~ 6038104 (+) True polm
XM_026943702.2 mRNA downstream 33338 6045240 ~ 6047205 (+) True ved
XM_026943839.2 mRNA downstream 47932 6059834 ~ 6080426 (+) False LOC113544829
XM_026943838.2 mRNA downstream 48159 6060061 ~ 6080426 (+) True LOC113544829
TU312620 other upstream 928183 5077881 ~ 5080617 (+) False triap1
TU311007 other upstream 3191542 2795548 ~ 2817258 (+) False pcp4a
XR_004579857.1 other upstream 3661415 2343661 ~ 2347385 (+) True LOC117599403
XR_004579765.1 other upstream 4589311 1414504 ~ 1419489 (+) False ponzr2
XR_004579764.1 other upstream 4589365 1414504 ~ 1419435 (+) False ponzr2
TU313925 other downstream 1054969 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 1104158 7116060 ~ 7118616 (+) False ddx55
trnar-ccu_6 other downstream 1356578 7368480 ~ 7368552 (+) True trnar-ccu_6
trnam-cau_30 other downstream 1356660 7368562 ~ 7368633 (+) True trnam-cau_30
trnar-ccu_7 other downstream 1357361 7369263 ~ 7369335 (+) True trnar-ccu_7

Expression Profile