RNA id: TU313866


Basic Information

Item Value
RNA id TU313866
length 160
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G264894
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 6962585 ~ 6962918 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctctctctctctctctctctctctctctctcacacacacacacacacacacactctctctctctctctctcacacacacacacacacacacacacacacacacacaaaaccacattcGTTCCACTCAACACGATTCTTGCCCAGGATGTAAAACAGCccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313877 lncRNA upstream 14843 6931878 ~ 6947742 (+) True G264903
TU313800 lncRNA upstream 260223 6701837 ~ 6702362 (+) True G264835
TU313402 lncRNA upstream 509734 6381666 ~ 6452851 (+) True G264475
XR_004579851.1 lncRNA upstream 520708 6439897 ~ 6441877 (+) True LOC117599393
TU313354 lncRNA upstream 678655 6218509 ~ 6283930 (+) True G264428
TU313910 lncRNA downstream 88139 7051057 ~ 7051362 (+) True G264933
TU313911 lncRNA downstream 88586 7051504 ~ 7051940 (+) True G264934
TU313913 lncRNA downstream 90950 7053868 ~ 7054082 (+) True G264936
TU313915 lncRNA downstream 92429 7055347 ~ 7055659 (+) True G264938
TU313921 lncRNA downstream 126749 7089667 ~ 7090962 (+) True G264944
XM_026943947.1 mRNA upstream 260764 6697674 ~ 6701821 (+) True plk2a
XM_026943672.2 mRNA upstream 266916 6687467 ~ 6695669 (+) True LOC113544738
XM_026943646.2 mRNA upstream 310733 6616207 ~ 6651852 (+) False LOC113544721
XM_034312805.1 mRNA downstream 145589 7108507 ~ 7113994 (+) True tmed2
XM_034312806.1 mRNA downstream 145595 7108513 ~ 7113994 (+) False tmed2
XM_034312947.1 mRNA downstream 153133 7116051 ~ 7126246 (+) True ddx55
XM_034312717.1 mRNA downstream 164833 7127751 ~ 7152305 (+) True naa25
XM_034312715.1 mRNA downstream 165013 7127931 ~ 7152305 (+) False naa25
TU313203 other upstream 950683 6008800 ~ 6011902 (+) True G264336
TU312620 other upstream 1881968 5077881 ~ 5080617 (+) False triap1
TU311007 other upstream 4145327 2795548 ~ 2817258 (+) False pcp4a
XR_004579857.1 other upstream 4615200 2343661 ~ 2347385 (+) True LOC117599403
XR_004579764.1 other upstream 5543150 1414504 ~ 1419435 (+) False ponzr2
TU313925 other downstream 103953 7066871 ~ 7082441 (+) True G264948
TU313944 other downstream 153142 7116060 ~ 7118616 (+) False ddx55
trnar-ccu_6 other downstream 405562 7368480 ~ 7368552 (+) True trnar-ccu_6
trnam-cau_30 other downstream 405644 7368562 ~ 7368633 (+) True trnam-cau_30
trnar-ccu_7 other downstream 406345 7369263 ~ 7369335 (+) True trnar-ccu_7

Expression Profile