RNA id: XM_034312947.1


Basic Information

Item Value
RNA id XM_034312947.1
length 2919
RNA type mRNA
GC content 0.43
exon number 14
gene id ddx55
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 7116051 ~ 7126246 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGGATCGCGCACTCTGTTGCATCGAAAGCATGGAAATGTGTTTAGTGAaacagagaaactgaaaagcagaaaaatggaGAGTATAAGCGATGGAAAATGGGATAGTTTACCAGTGAAACTTCACGACAGCATACTGCTGACTCTGAAGAAGCTGGGCTTTATTTACATGACTCCAGTTCAGtcAGCATGCATCCCTCTCTTCATGAGCAATAAAGATGTTGCAGCTGAAGCGGTTACAGGCAGTGGGAAGACTCTTGCTTTTGTCATTCCTCTGCTAGAAATCCTCCTGAAACGCGAGGAGAAGCTGAAGAAAATGCAAGTTGGCGCTTTGATCATCACACCGACCCGAGAGCTGGCGATCCAGATCAGTGAAGTCGTGGGCCAGTTTCTTGAGGAATTTCCTCAGTTCAGGCAGATTCTTTTAATTGGTGGAAGCAACCCCATTGAAGATGTCGAAAAGTTCAAGACCAATGGGGCGAACATTGTGATTGGAACCCCTGGGCGGCTGGAGGACATGTTCAGGAGGAAAGCTGATGGCCTTGACTTGGCCAGCTGTGTGAAGGCTTTGGACGTGCTTGTTCTAGATGAAGCTGACAGACTGTTGGACATGGGCTTTGAAGCAAGCCTGAACACGATTTTGGGCTATTTGCCCAAGCAGAGGCGCACAGGCCTTTTCTCAGCAACGCAGACTCAGGAGCtggagaagctggtgagggctGGCCTCCGAAACCCGGTCCGTATCACGGTGAAGGAGAAAGGAGTGGCAGCTACTAGCGTGCAGAAGACACCAGCGAGGCTTAGTAACTACAGAATACAAGGAGAAATCTGTAGAACAGAAGACAAGTTTAACACGCTGGTGGCTTTCCTGagacaacacaaacatgagAAGCAGCTCGTCTTCTTCAGcACATGCGCTTGCGTGGAGTATTTCGGCAGAGCGCTGGAGGTCTTTATCAAAAACGTCACCATTCTTTGTATCCATGGCAAGATGAAGGACAAGCGGAACAAGATCTTCTCTGAGTTTCGGGAATTAAAGAGTGGGATACTCGTGTGCACTGATGTGATGGCAAGAGGCATCGACATCCCGGATGTGAACTGGGTGCTACAGTACGATCCTCCCAGCAGCGCGAGTTCTTTTGTGCATCGATGTGGCCGAACTGCTCGTATCGGAAACCGAGGCAACGCTCTGGTCTTTCTCCTGCCAATGGAGCAATCCTACATCAGTTTCCTGTCTATCAATCAAAAATGTCCTCTCCAGCCATATCCTCGTGTGAAGGACGTAGTGGACGTGTTGCCCAAACTGAAGGCTCTGGCTCTAGGGGACAGGGCCGTGTTTGAGAGAGGAATGAAGGCGTTCGTCTCGTTTGTCCAGGCTTACGCAAAGCACGAGTGCAGCCTGATATTCCGGCTCAAAGATCTGGACTTTGCCGCTTTAGCTCGAGGCTTTGCTCTTCTTCGTATGCCCAAGATGCCTGAGTTGAGAGGCAAGACGTTCCCCGACTTTGAAGAGATCACAGACACGGACTCCATCCGCTTCAAGGACAAGAACCGAGAGAAACAGAGGCAGAAATCATTACAGGagcaaaaggaaaaggaaaagcagGCACCATCCCTAAAAAAGAACTTCATTAGGAACAAAGCCTGGTCCAAGCAGAAATCCAAGAAGGATAAGAAGCGGAAGATGGCTGCCAAAAGGAAGATGAATGAGGGATCAGACATGGAGGATGAGGACATTGATGAGCTTCTGAGCGACACACGTCTACTGAAGAAGCTGAAGAAGGGCAAAATTAGCGAGGAAGACTTTGATAAGGAAATGAGTGCTGGAAGAAATTCAAAGCATAAAAGAGCAGGTCCCTCTCACGAGGACAGCGCAGAAGGAGAGAGTGAATGAACACACAAACCTGGACTGTACTTCAGATTTCAATTCTGCTGAGATGTCATTGTGCTGCATCAGCACAGGCAAAAATTCATACAACTTTGTGGTTTCacatttgttattgttgtatATCAGCATCTATAATTATTAAAGCCTGTAGGATTTCTGTAGTGAGaagaatactgtatatgtattgCAGAAACCGGATTTTGTAAACAACATTTTAAGAATTTGACATTTGATTCTTATCATTTCATGCAGTCTCAAAAGAGGCTTTTCTGTAATGTCAATTTAAACGTGTCTTTCGTTGAAAGGGGGGTGAGAACGCATCTTATAGGGCAGAGTTGCATTCGCAGAATATCTTGTGCAGAATAAATGTCCATGTATTTACATTACTTTATGGTGTGACAGTTTTTCTATAATTCCTAATAATCAGTAGATTTGGTTAGAGTACACAAAATGCAACAGTTATTTAAATCAACATTAGCTAGACATGAATTGCGTAACAGTAGTAGCCCTCTAAGAGAACTCCCAGTTTGGGTGAAAGGGCTTATTTCACAGTCCACAGTCcaattttgtaatgaaaacaaaacctTTAGGACAAAATTAAGACAAACATTTTATACCAACAAGACAGTAACTGTAGTGTGTCAGGTTTCTTGTTTCATTATATTACAAGCAGCAGTTTTTCTTGATATGTGTTTCAAGTCTGCCTGATATCATAAAATCCTCTGTTGTCATAGCAACCTAAAAAACCAAGAGGTGTATTACGTTTTCTCTTAAACtaattttgtgttcattttcttCTTGTTGCAAGacatacaaattaaattttttagcTTCCAGGAATAATAATAgccaaaataacaataataacaacaacaataactattattattgttacgaCTGTAGGTGAATTGTAGAATGGAGGtacaattatttttcatttaaaaacaatggaAGATGCAAATTTTGCACTCGGATGTATTGTGTATTTCACATGTATTGTGTAAATCACAATAAAAGATACTTGGTGGTGTTA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14809 DDX55, SPB4; ATP-dependent RNA helicase DDX55/SPB4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313921 lncRNA upstream 25089 7089667 ~ 7090962 (+) True G264944
TU313915 lncRNA upstream 60392 7055347 ~ 7055659 (+) True G264938
TU313913 lncRNA upstream 61969 7053868 ~ 7054082 (+) True G264936
TU313911 lncRNA upstream 64111 7051504 ~ 7051940 (+) True G264934
TU313910 lncRNA upstream 64689 7051057 ~ 7051362 (+) True G264933
TU313949 lncRNA downstream 26553 7152799 ~ 7153864 (+) True G264972
TU313947 lncRNA downstream 28028 7154274 ~ 7157567 (+) True G264970
TU313953 lncRNA downstream 38882 7165128 ~ 7166073 (+) True G264976
TU313963 lncRNA downstream 121939 7248185 ~ 7249078 (+) True G264986
TU314033 lncRNA downstream 242243 7368489 ~ 7369482 (+) True G265039
XM_034312805.1 mRNA upstream 2057 7108507 ~ 7113994 (+) True tmed2
XM_034312806.1 mRNA upstream 2057 7108513 ~ 7113994 (+) False tmed2
XM_026943947.1 mRNA upstream 414230 6697674 ~ 6701821 (+) True plk2a
XM_026943672.2 mRNA upstream 420382 6687467 ~ 6695669 (+) True LOC113544738
XM_026943646.2 mRNA upstream 464199 6616207 ~ 6651852 (+) False LOC113544721
XM_034312717.1 mRNA downstream 1505 7127751 ~ 7152305 (+) True naa25
XM_034312715.1 mRNA downstream 1685 7127931 ~ 7152305 (+) False naa25
XM_034312716.1 mRNA downstream 1685 7127931 ~ 7152305 (+) False naa25
XM_026943803.2 mRNA downstream 43002 7169248 ~ 7174553 (+) False tor4aa
XM_034312669.1 mRNA downstream 44964 7171210 ~ 7174553 (+) True tor4aa
TU313925 other upstream 33610 7066871 ~ 7082441 (+) True G264948
TU313203 other upstream 1104149 6008800 ~ 6011902 (+) True G264336
TU312620 other upstream 2035434 5077881 ~ 5080617 (+) False triap1
TU311007 other upstream 4298793 2795548 ~ 2817258 (+) False pcp4a
XR_004579857.1 other upstream 4768666 2343661 ~ 2347385 (+) True LOC117599403
trnar-ccu_6 other downstream 242234 7368480 ~ 7368552 (+) True trnar-ccu_6
trnam-cau_30 other downstream 242316 7368562 ~ 7368633 (+) True trnam-cau_30
trnar-ccu_7 other downstream 243017 7369263 ~ 7369335 (+) True trnar-ccu_7
trnam-cau_31 other downstream 243099 7369345 ~ 7369416 (+) True trnam-cau_31
trnam-cau_32 other downstream 243561 7369807 ~ 7369878 (+) True trnam-cau_32

Expression Profile