RNA id: TU314005


Basic Information

Item Value
RNA id TU314005
length 400
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G265023
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 7417234 ~ 7417633 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAATAACAGCCACGTGCGCTAGTTCATAGGTTTACGCGCTTGTCATGAGCACTTCAGGGGCGGGTCCGCGGTTTTTTATTGGTTGGAGATATTTCTCCACACAGGCACTTCCTGTTGTTGCTTTGAAGGAGAAACGTTCCTGAAGGTCTGATCCAAGATCAACTTTCCCCATTCCATGTGTTAAATATCACCATAATATACAAGGCAGAAGCTGAACACAGATCAGCTGGTTAACCTGTCAGTTTTTAACCACAATTTCCTTTCTTCATGCTGAACAGCGGCATGACGTCAGAAAggttgaaaaaaatttaataaatgctttatttacGAATTTACACCTGCTGGTCATGTATttcatgtatttaaaaacattacacacacacacacacacacacacaca

Function

GO: NA

KEGG:

id description
ko04142 Lysosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314033 lncRNA upstream 47752 7368489 ~ 7369482 (+) True G265039
TU313963 lncRNA upstream 168156 7248185 ~ 7249078 (+) True G264986
TU313953 lncRNA upstream 251161 7165128 ~ 7166073 (+) True G264976
TU313947 lncRNA upstream 259667 7154274 ~ 7157567 (+) True G264970
TU313949 lncRNA upstream 263370 7152799 ~ 7153864 (+) True G264972
TU314046 lncRNA downstream 2377 7420010 ~ 7420244 (+) True G265052
TU314047 lncRNA downstream 5137 7422770 ~ 7423011 (+) True G265053
XR_004579781.1 lncRNA downstream 13729 7431362 ~ 7432343 (+) True LOC117599325
TU314001 lncRNA downstream 77871 7495504 ~ 7499302 (+) True G265019
TU314312 lncRNA downstream 119222 7536855 ~ 7539322 (+) True G265270
XM_026943711.2 mRNA upstream 23754 7384282 ~ 7393480 (+) True oclna
XM_034312852.1 mRNA upstream 35246 7371065 ~ 7381988 (+) True marveld2a
XM_034312853.1 mRNA upstream 35246 7371076 ~ 7381988 (+) False marveld2a
XM_034312854.1 mRNA upstream 35246 7371090 ~ 7381988 (+) False marveld2a
XM_034312855.1 mRNA upstream 35246 7371116 ~ 7381988 (+) False marveld2a
XM_034312378.1 mRNA downstream 14908 7432541 ~ 7434926 (+) True LOC117599324
XM_026943921.2 mRNA downstream 200666 7618299 ~ 7620573 (+) True cryba4
XM_026943872.2 mRNA downstream 210448 7628081 ~ 7717349 (+) True grk3
XM_026943758.2 mRNA downstream 300422 7718055 ~ 7770444 (+) True LOC113544796
XM_026943759.2 mRNA downstream 300422 7718055 ~ 7770444 (+) False LOC113544796
trnam-cau_33 other upstream 46895 7370268 ~ 7370339 (+) True trnam-cau_33
trnam-cau_32 other upstream 47356 7369807 ~ 7369878 (+) True trnam-cau_32
trnam-cau_31 other upstream 47818 7369345 ~ 7369416 (+) True trnam-cau_31
trnar-ccu_7 other upstream 47899 7369263 ~ 7369335 (+) True trnar-ccu_7
trnam-cau_30 other upstream 48601 7368562 ~ 7368633 (+) True trnam-cau_30
TU314651 other downstream 759033 8176666 ~ 8187611 (+) False tmem167a
XR_003404565.2 other downstream 857414 8275047 ~ 8276323 (+) True LOC113544932
XR_003404563.2 other downstream 915838 8333471 ~ 8353841 (+) False LOC113544929
XR_003404564.2 other downstream 915857 8333490 ~ 8353841 (+) False LOC113544929
TU314760 other downstream 915869 8333502 ~ 8353815 (+) False LOC113544929

Expression Profile