RNA id: TCONS_00007998


Basic Information

Item Value
RNA id TCONS_00007998
length 921
lncRNA type lincRNA
GC content 0.40
exon number 3
gene id XLOC_004183
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 28522364 ~ 28525496 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggcgcacgcggccacgcgcagcgcttcacttcacttaattactaacacctgacctgcagtgcagcagaattcagaggtccagttgagggCATCAAGAACACGCAGATAGCATAAacctgtgtcagcctggacagactgTAGATCTGCTACTCAACGCCAAGGCTTTTGTATGCATGTCTGACTACTACAGTGTTCTTtaaaggttttctggaagctccatttgagggcatcaaggacatactgatggcctaaaccagtgtcagcctagacagacagacatctattgcagttctgctacacaagaccaaactctctgcttttgtatggatgtctgactagtacagtgttctctaaaggtataactggagcaaaacaacagcatccgttacagtgaaatttgtgttcataaaagatagtgatatatgtgtaacaggtccagtacatttgtcataaaggttaaatcacagtaagtactgtaaaaataacttgtttgcctctgccacaacaggtcatggtgtgtgcatactgctcgtagtaaacacacacgctgatctgatgcgggagagatatacgcaaacacatttgtatttactgttttgttttgcctcactaaagtgttgttggagcttggtatgttcacagttgaaatcactgaagtcacatggaacgttttgacaatgtgttttgtgccttatcttgacaattgggaccattgctgtctgtagaggatgagcatttaatctaaaatattttagtttgtgttctgaagattaacaggtctctgggatgacacaagtaattaataacagaacctatatgaacacttaatgtgacatgtaatagtgaaatTTATTTACTAGGTGAATAgtcctacattcacaaatgtgagccattattataagacccatgtgaacatgcaat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000162160

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008805 lncRNA downstream 210 28513742 ~ 28522344 (-) True XLOC_004182
TCONS_00008804 lncRNA downstream 98413 28418876 ~ 28424141 (-) True XLOC_004181
TCONS_00008802 lncRNA downstream 132453 28127257 ~ 28390101 (-) False XLOC_004179
TCONS_00008803 lncRNA downstream 322050 28196957 ~ 28200504 (-) True XLOC_004180
TCONS_00007994 lncRNA downstream 442850 28078643 ~ 28079704 (-) True XLOC_004178
TCONS_00008806 lncRNA upstream 560213 29085366 ~ 29088626 (-) True XLOC_004187
TCONS_00008807 lncRNA upstream 574774 29099927 ~ 29319854 (-) False XLOC_004188
TCONS_00008808 lncRNA upstream 574774 29099927 ~ 29319877 (-) False XLOC_004188
TCONS_00008011 lncRNA upstream 598444 29123597 ~ 29319907 (-) False XLOC_004188
TCONS_00008809 lncRNA upstream 671149 29196302 ~ 29319919 (-) False XLOC_004188
TCONS_00007996 mRNA downstream 365425 28127836 ~ 28157129 (-) True XLOC_004179
TCONS_00007995 mRNA downstream 374521 28127199 ~ 28148033 (-) False XLOC_004179
TCONS_00007991 mRNA downstream 435639 28052699 ~ 28086915 (-) False XLOC_004178
TCONS_00007990 mRNA downstream 559797 27939882 ~ 27962757 (-) True XLOC_004177
TCONS_00007989 mRNA downstream 569419 27920588 ~ 27953135 (-) False XLOC_004177
TCONS_00008005 mRNA upstream 65580 28590733 ~ 28614608 (-) False XLOC_004184
TCONS_00008007 mRNA upstream 108564 28633717 ~ 28639498 (-) True XLOC_004185
TCONS_00008008 mRNA upstream 117760 28642913 ~ 29082429 (-) False XLOC_004186
TCONS_00008009 mRNA upstream 118454 28643607 ~ 29082175 (-) False XLOC_004186
TCONS_00008010 mRNA upstream 159515 28684668 ~ 28911172 (-) True XLOC_004186
TCONS_00007992 other downstream 435630 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00007974 other downstream 803285 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007964 other downstream 1019234 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007963 other downstream 1019422 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00007960 other downstream 1774125 26748292 ~ 26748429 (-) True XLOC_004165
TCONS_00008006 other upstream 65735 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00008022 other upstream 1127537 29652690 ~ 29657852 (-) False XLOC_004191
TCONS_00008030 other upstream 1284544 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008033 other upstream 1371219 29896372 ~ 29909625 (-) False XLOC_004196
TCONS_00008039 other upstream 1419777 29944930 ~ 29946640 (-) True XLOC_004197

Expression Profile

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