RNA id: TU314377


Basic Information

Item Value
RNA id TU314377
length 1468
lncRNA type intronic
GC content 0.36
exon number 2
gene id G265326
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 7638978 ~ 7640736 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAACCTGATATATTTGGTACTCAATAACTATCTATAATCAGACATAAGAATGCGATTTGAGACTCTGTCATATGGTGCTACACTGCCCCACTtatgttatttatgttaatattgcACCACATGAAGTAATGGTTGATTTATACTTCCGCATTAGCTGTCTTTGTGTCACGACCAAGAGAGGGGGATCATGGGTAAACATGGCACGCAGAGACATGCTAGCATACAGTCCTCCCACGAGCTAACCGTGTGTTGTGTGCCTCTTCAGTGCTGTGCATCAGCTGAACGCTAATTGGTTTGCTGGGAGGTGTGTCTGAGTGCATATTCAGAAATAGTTGTTCAAAGTATATTTGTTCAAagtatatttgaaatataaacaataaaatgctaaacagtaaagtgtaaagacaaattttttttttgttttgtttcatccAGTACTTTACATCTTCTATAGACACGTTTGTGTTCGCCAGCTGCTTTCTGAAAGTGTAGTCCGTTAAAAACCTTAACACAGCTCATGacagaaacagatgaaaaacGCCCTGTAAAAATCTATTTAGACGTTTTAGACACTGTGTTAGGTTCTCAGACCAGtgtctttaattaaaaactacTCCTCTGTGATAAAACTCTTGCACTGAACAGCAAGGATAAATGAACACAAGCGAGTTTTCCCCATGCTTCATGTTTGCTTCACACATGGTGATATGATCGTGTTACTGTATGATGGATTTagttatagaaaaatacaaTTGTGAAATTGTTAACATACTGAAAATATGTTCTATAAAGCATGAGcctttataacagctataatgGTCAGTTTAATCCTGCAGGATcgcacactttacacacttttgCACACTTCTCTTTCTTCTAATTGATTCCAAGGATACACAGTGTAGGTGATGTAAAACACCGGCAactcaattaaaaaataaaagggagTCAGTGGTTGATAGAATTGCGGCTTCAAACACTAGTTACATTTAAGTGCTTCGATATGAAAACCGCTCATACTGCTCAATGTGGACGagataaaaacacttcagaaatgcttttaaataagAACGCACTTCGTTTATAATTTTTCATGTGGAGCTTCTTTTTTCaagcacttttcaaaacaaaattatgtCTGCAATATGCTCCGTTTAATCCTACAGTGAAACACGGAACTCACATtgtattttaGTTTCATTTTTGCCATAGTATCATATTAATATCAAACTTTGTGATACTAAAATTGGTATTGATATTAAAGTCAAAATTCTGGTGTTACACTACACCCAACCGTGCggagtaaaacaacaaaaaacagaaaccaaGAAATTTCTCAGTCGACATTgccttcattctttcttttactgATGTAATGCATTCAGCACAGAAGCTATAGCTAACTGAAAATATGTTagcattaaacatttatagtgAGGCCTACCTTACTGCAAACTAACATGCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314376 lncRNA upstream 912 7636886 ~ 7638066 (+) True G265325
TU314344 lncRNA upstream 53076 7585611 ~ 7585902 (+) True G265294
XR_004579804.1 lncRNA upstream 84399 7549590 ~ 7554579 (+) True LOC113544905
XR_003404560.2 lncRNA upstream 84399 7549590 ~ 7554579 (+) False LOC113544905
XR_004579805.1 lncRNA upstream 84399 7549590 ~ 7554579 (+) False LOC113544905
TU314379 lncRNA downstream 18791 7659527 ~ 7661080 (+) True G265328
TU314382 lncRNA downstream 66664 7707400 ~ 7709793 (+) True G265331
TU314480 lncRNA downstream 203053 7843789 ~ 7844656 (+) True G265417
TU314446 lncRNA downstream 204057 7844793 ~ 7847877 (+) True G265383
TU314481 lncRNA downstream 208067 7848803 ~ 7849034 (+) True G265418
XM_026943921.2 mRNA upstream 18405 7618299 ~ 7620573 (+) True cryba4
XM_034312378.1 mRNA upstream 204052 7432541 ~ 7434926 (+) True LOC117599324
XM_026943711.2 mRNA upstream 245498 7384282 ~ 7393480 (+) True oclna
XM_034312854.1 mRNA upstream 256990 7371090 ~ 7381988 (+) False marveld2a
XM_026943758.2 mRNA downstream 77319 7718055 ~ 7770444 (+) True LOC113544796
XM_026943759.2 mRNA downstream 77319 7718055 ~ 7770444 (+) False LOC113544796
XM_034312496.1 mRNA downstream 144942 7785678 ~ 7855941 (+) False LOC113544706
XM_026943618.2 mRNA downstream 144944 7785680 ~ 7855941 (+) True LOC113544706
XM_034312495.1 mRNA downstream 165873 7806609 ~ 7855941 (+) False LOC113544706
trnam-cau_33 other upstream 268639 7370268 ~ 7370339 (+) True trnam-cau_33
trnam-cau_32 other upstream 269100 7369807 ~ 7369878 (+) True trnam-cau_32
trnam-cau_31 other upstream 269562 7369345 ~ 7369416 (+) True trnam-cau_31
trnar-ccu_7 other upstream 269643 7369263 ~ 7369335 (+) True trnar-ccu_7
trnam-cau_30 other upstream 270345 7368562 ~ 7368633 (+) True trnam-cau_30
TU314651 other downstream 535930 8176666 ~ 8187611 (+) False tmem167a
XR_003404565.2 other downstream 634311 8275047 ~ 8276323 (+) True LOC113544932
XR_003404563.2 other downstream 692735 8333471 ~ 8353841 (+) False LOC113544929
XR_003404564.2 other downstream 692754 8333490 ~ 8353841 (+) False LOC113544929
TU314760 other downstream 692766 8333502 ~ 8353815 (+) False LOC113544929

Expression Profile