RNA id: TU314382


Basic Information

Item Value
RNA id TU314382
length 2371
lncRNA type intronic
GC content 0.43
exon number 2
gene id G265331
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 7707400 ~ 7709793 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggaaatcttaacgCTACAGTATACTAAGACATTCTAGATAATAGATTGCTTTCAACTttgaggcaacagtttggggaaggcccacatatggatgtgatggtcatgtgtccacatacatttggccatatagtgtatatctaaAGCACCTTTACTATAGTTAGTACCAACATGCTTGCAGAAGTTGAAATCAGCAAAACCCATCAGAAGATCTGCATGTAACCAGACTGCCACTGCAGTGGAGAAGCTTAAACGCTGCCTAGACACAACAGACTGGGAAGTATTCAACAGTGCTTGTAGAGGTCTGCATTCACACTAAAACTGTTGACGTACAACAGTGCAAAGTCATGGTTCACCAAAGAATTGAGGACCCTTCAGAAGGATGCAACCTATTAAAGTGGGGACAGGAAATGCCACAAGCAGGCCAGGAATCAGCTCAACTCAGCACTATGATCTGCAAAAAGAAATTACAACACCAAACTGGAACATAATGTTGCCAACAAAGACCGTTCATCTGTCTGTTCGTCTCAATACTGTGACTAACTATAAAAGGAGACCCTCTCAACTACACCTTGATCAGTCTGTCTCTGAGAAGCTTAACACCTTTTACAGTGGATTTGAATCACAAAACACTTGGAATGATCACACCGATAGTCACTGCTCTTCACCTTGATCCCTTTCAGTCTGCATGCAGGGTCAGTAGATCAGTGGATGATGCTGTAGATATGGGACTGCACTTTGTCCCTCGGAATATGGACAACAGAGCCACGTATGTCGGAATCCTGTTTGTTGACTTTAGTTCTGCATTCAGTACAGTCACTCCTGATCTACAGCTGAGCAAATTTTCACAAATGAAAGTTGATCAGCCCGTATGTAAATAGATCTACAGCTTCCTGACTAATCATAAGCAGTATGTGCAAGTAGAGCCCTATCTCTCAACCTACCGATTTATATGCATAGGTGCatcacagggctgtgtgctctcTCCCCTTTTGTACTCCCTGTATAATAATGACATCCAGTGGTCCCTCTGTAAAATTACTGAATTTGCAGACAACGCCTCAGGTCTAATATGGGACAGGGATAAGAAGTAAGCATCTATGTGAAGTGAACCATCTCACTAGGTCGTTCTATCCGTAGAAATCCGTAGAGATACAGATTCTGTCTGTATTGAGATACAGATTCTGTCTGTATTGAGATACAGATTCTGTCTGTATTGAGATACAGATTCTGTCTGTATCTCAATACCCCCCAGACTGGAAATGATAGTAGACTTAAGGAAACACCCTGTCTTCTGCAAATTACTGGGCACCATCACTCTCAGTTGCGATGAAAACATCACTTCCATCACAAAAGAAATGCATGTACTACTTAAGACAGCTTAAGAAACTCAACTTTCCATCCAGAAAAGGCTTTAAAGCACTCTGAAGCAATATGAACAGGCACCTGAACAGTTTCTTTACCAAAGCCGTGTCCCTCCTTAATCAGAATAAAGAGATCCTGATTCTTTATCTGACTGAGTAGCTCTCGTCTACCTCATAGTGATGGCCAAGCATGTATATGAATGGTATTGACTGGTGATCTGGTGTCTTACAGGTGAGATCACCACCCGGACAGCTTTGGTTCAAATGCTGGACCCCAACCTTTTGGGGGTTCAAGGTTTTGCCAATTTCAGACCCCAACAATGTTGTTGCTCTGTTtcaagaaattattatttttttcttctttgggAGATGATGCTATAAAACTTTGACCACACAGTTCAAAACAGGAGGTTCTGTTCAGGATACCTCAAGATAGTTCAAAAGAAGAATCACCTTTTCCATCCAGTTTTAGATTTGAGATGTTTGGAGTGGTTTCTGAAGACTCATATTTGATTTGTGCCGAGTTTCAGATGTTGTTCAAGCCGTCCAGCCGCTAAGGACCTGCACAATGCTTACATTTATGTTCCCATCGCCAGAGCACGGATGTTTAAGGTTTGCCTTCCTTGGTCAAGTTTTCCAGTGTATACTTTTTGGAAAATTGAATACAGGTGGCCTTGTCTCCCCTGATGGTCACTGGCATCAGGATACCAAGGAGCAGGCCATCAAGAACAGGTCTACCCTCCTCAAACATTGCAGCATTTAGGCTCACACTCAGGAAAGGGCTTCCTAAAACATAGTAGATAACACAGATGCACTAAGAATGCTAGCCACCCCATTGTGCCAGCATGTGGCGAATATTATTGTCAGTGAGGTTCAGCCAAGCCTTTGCCGGCCATATTTACTACCTTTAACAATGAGGACTGAGGACAATGGCTGCGTCCAATTCCTACAATCTTGACCTCCAATGATGACTGACAGGAGCAATTCTTCACCTATCCTGTCACAGTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314379 lncRNA upstream 46320 7659527 ~ 7661080 (+) True G265328
TU314377 lncRNA upstream 66664 7638978 ~ 7640736 (+) True G265326
TU314376 lncRNA upstream 69334 7636886 ~ 7638066 (+) True G265325
TU314344 lncRNA upstream 121498 7585611 ~ 7585902 (+) True G265294
XR_003404560.2 lncRNA upstream 152821 7549590 ~ 7554579 (+) False LOC113544905
TU314480 lncRNA downstream 133996 7843789 ~ 7844656 (+) True G265417
TU314446 lncRNA downstream 135000 7844793 ~ 7847877 (+) True G265383
TU314481 lncRNA downstream 139010 7848803 ~ 7849034 (+) True G265418
TU314482 lncRNA downstream 141577 7851370 ~ 7851629 (+) True G265419
TU314483 lncRNA downstream 142122 7851915 ~ 7852265 (+) True G265420
XM_026943921.2 mRNA upstream 86827 7618299 ~ 7620573 (+) True cryba4
XM_034312378.1 mRNA upstream 272474 7432541 ~ 7434926 (+) True LOC117599324
XM_026943711.2 mRNA upstream 313920 7384282 ~ 7393480 (+) True oclna
XM_034312854.1 mRNA upstream 325412 7371090 ~ 7381988 (+) False marveld2a
XM_026943758.2 mRNA downstream 8262 7718055 ~ 7770444 (+) True LOC113544796
XM_026943759.2 mRNA downstream 8262 7718055 ~ 7770444 (+) False LOC113544796
XM_034312496.1 mRNA downstream 75885 7785678 ~ 7855941 (+) False LOC113544706
XM_026943618.2 mRNA downstream 75887 7785680 ~ 7855941 (+) True LOC113544706
XM_034312495.1 mRNA downstream 96816 7806609 ~ 7855941 (+) False LOC113544706
trnam-cau_33 other upstream 337061 7370268 ~ 7370339 (+) True trnam-cau_33
trnam-cau_32 other upstream 337522 7369807 ~ 7369878 (+) True trnam-cau_32
trnam-cau_31 other upstream 337984 7369345 ~ 7369416 (+) True trnam-cau_31
trnar-ccu_7 other upstream 338065 7369263 ~ 7369335 (+) True trnar-ccu_7
trnam-cau_30 other upstream 338767 7368562 ~ 7368633 (+) True trnam-cau_30
TU314651 other downstream 466873 8176666 ~ 8187611 (+) False tmem167a
XR_003404565.2 other downstream 565254 8275047 ~ 8276323 (+) True LOC113544932
XR_003404563.2 other downstream 623678 8333471 ~ 8353841 (+) False LOC113544929
XR_003404564.2 other downstream 623697 8333490 ~ 8353841 (+) False LOC113544929
TU314760 other downstream 623709 8333502 ~ 8353815 (+) False LOC113544929

Expression Profile