RNA id: TU314665


Basic Information

Item Value
RNA id TU314665
length 2493
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G265553
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 8196581 ~ 8253208 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAGAAACACAACagttaaacataaaaaagcattatgcttagttttaaaaaatgattatcATATATTAACAATCACATACCATTCGGAATTACTGGCAACTGTAAATGGTATTATTATCCTAATTTTATCATTGGTCAGAggaaacaaaaatatcacaatttAAACACATCATTCTCCTGAACAGAGGATGACACAATAACTGGGATTCTAGAAACACCCTATAATATTAGTACTCTATAATATTGATGATATGGGCAAACACATGGCAAAGCATCAGGATCAGGATTCCCACAGTGACAGAGTAGGAAGAAATATaccatgtacactatatggctaaaagtatgtggacacatgaccatcacacccaactGTTGCCACAATTTTGACAggacagaattgtctagaatgttctgaatgagctgttccagcatgacagtgcccctgtgcacaaatcaTGGTCCATAAAAACATAGCTTCCCAAGGCtgaagaacttgagtggtctGCAGAGATGGCTGAcatcaaccctactgaacacctgtaggatgaactggaatgccaactaTGCGCTAGGGCTTCTTGCCAAATAACagttcctgacctcactaatgctcttatggctgaatgggcacaaatccccacagtcacattccaaaatctagtggaaagccttccgaGAAGAGTGTAGGCTcttacagcagcaaaggggaaccaactccatattaatgcccatggttttggaatggaatgttcaacaaacatatatgggtgtgatggtcacgtgtccacatacttttgaccaagCAAATACATAACCATGGAACACGAAACACAAGACAcagtaaactaaaaaaaaaaacagggacaTAATACCTGCCATGTCCACAACTATGTCCCTAGTCAATAATTAATCTCATTAAAACTGTCTCTAGTCATTATCATAATCTTAATAGCATATGTGTGAAAATTTTGTTTTCTTGGTACTTAATATGTTCATGATGGTTTTCATAATGTTTACATATGCACCACCAAACTTTAGTGTGGATCAGGCTCAAttttatacatgtacatacTGCATACATGAGTGGACAACATGGAGCAATTGAGTCCAATTGAAGTCTAAATTTAGTTGAATTTAAAATTGCCATCCTGATTGCGTTTTTGCAGTCAGTGAAAATTGGAGCCAGAGTAGATATGGCTGGTCAGACAATGCAACTGCTGCTCAGCTGCCCCAATCATTCACAGACTCTTCATGCTGGGAGTGTACATGGTGCCATGCATATGACAAGTTGACAAAATAATGCATCGAACAATGCTAGCTGAAAGGGGTAAGTACACCATTATTAGTTAACATGTAAAACATGCTGCTAAATTACAGTCATATAATTTGCAGAGGTAtattcattttactgttttacaaaaaaagattttagagctttgagcCATGACTGACTGGGCTACcaccagctagctagctaatgtttgctAATCCAGCGTTTCTCGAACACTGGGTTGCGACCCAAAAGTGGATCATGGATCATTGTCTGCTGGGTTCCGAGATCTTTTCTGTCATAAGTACAAATTACCAATTAGAATAGAACCATATTTGCAATGTTTAGGGCAACAGTGACTCTATCGTCAAATTGTGTTAATATCTCCAGGTTTACGTAAACGGCCGAAATAAGGCTGACATCATTTATTAGCTGTCCAATCATAGACATCAATCAAGGTTTCTTTACGTAGCATTGCTGTTATGTTTGTGCTAGCTCCATGCAATACATGTCTGAACACAATTCTATGTCTGGaaaaatgcatcttttttttttttttttaaaaacacgtTTTCCACCACACATCACCATTGCGTTTACAGTTAGGATGACAGGcatgttaattttaatttatcagCAGATTATTGACTTTTCTGCACGATTTTTTTGGCTACCGTGAAATGTAATGTACACGTGTATAGCGATTACAAACAGTTGATAAGTTGACCGAGCTTTTCCAAAATTCAAATGGCGTGACCGCAGTGAAAAAAATCCTTCGGAGACCTCCTGGCGACGTAGTGAAGATGCACATGCggtcttaaaaaaaatttcttgcaATTCTTGTATTTTCTCTTATGGAGTAATGTGGCGTCGAcgagacttttattttgaaatgtactCACGGTTCAGAACCTCTTGTGGACTAAAGCAGATACTTTATACATGTTATAATAGTTTTAGTTATTTTTCATAATCCAAGATTTATGTGTTACTGTTTGGCTAAAACCAATCGCTGAGtcttttttcctcatgttcACTTCCCGGTGCCCGTCGGAAAATTACCAGTGTCTGACTGACTTACCGCTAACTTCTTCAAACAAAACTCTTAAAAAATAACTGTTAAAGATTCAAAtccgtttaaaaaaaacaaaaaaacaaaaaaacagtgataCCTTGCATCGGAGAGTTAATTCGGCCACTGTACTTTCACAAGTTTGTTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314656 lncRNA upstream 6782 8189180 ~ 8189799 (+) True G265544
TU314654 lncRNA upstream 8970 8175514 ~ 8187611 (+) True tmem167a
TU314652 lncRNA upstream 8970 8176666 ~ 8187611 (+) False tmem167a
TU314653 lncRNA upstream 8970 8176666 ~ 8187611 (+) False tmem167a
TU314628 lncRNA upstream 99008 8095403 ~ 8097573 (+) True G265520
TU314676 lncRNA downstream 6883 8260091 ~ 8260403 (+) True G265564
TU314677 lncRNA downstream 7308 8260516 ~ 8260754 (+) True G265565
TU314752 lncRNA downstream 46616 8299824 ~ 8302326 (+) False G265622
TU314751 lncRNA downstream 47988 8301196 ~ 8302919 (+) True G265622
TU314765 lncRNA downstream 87302 8340510 ~ 8342287 (+) True G265635
XM_026943735.1 mRNA upstream 8971 8176891 ~ 8187610 (+) False tmem167a
XM_026943629.2 mRNA upstream 252453 7937228 ~ 7944128 (+) True cetn3
XM_026943628.2 mRNA upstream 252453 7937883 ~ 7944128 (+) False cetn3
XM_026943772.2 mRNA upstream 286326 7891511 ~ 7910255 (+) True scarb1
XM_034312583.1 mRNA upstream 289950 7890041 ~ 7906631 (+) False scarb1
XM_026944007.2 mRNA downstream 76497 8329705 ~ 8353841 (+) False LOC113544929
XM_026909772.2 mRNA downstream 462221 8715429 ~ 8731985 (+) True rnft1
XM_026909767.2 mRNA downstream 819221 9072429 ~ 9076274 (+) True si:ch211-244c8.4
XM_026927880.2 mRNA downstream 881952 9135160 ~ 9151699 (+) True zdhhc20a
XM_026927881.2 mRNA downstream 881953 9135161 ~ 9151699 (+) False zdhhc20a
TU314651 other upstream 8970 8176666 ~ 8187611 (+) False tmem167a
trnam-cau_33 other upstream 826242 7370268 ~ 7370339 (+) True trnam-cau_33
trnam-cau_32 other upstream 826703 7369807 ~ 7369878 (+) True trnam-cau_32
trnam-cau_31 other upstream 827165 7369345 ~ 7369416 (+) True trnam-cau_31
trnar-ccu_7 other upstream 827246 7369263 ~ 7369335 (+) True trnar-ccu_7
XR_003404565.2 other downstream 21839 8275047 ~ 8276323 (+) True LOC113544932
XR_003404563.2 other downstream 80263 8333471 ~ 8353841 (+) False LOC113544929
XR_003404564.2 other downstream 80282 8333490 ~ 8353841 (+) False LOC113544929
TU314760 other downstream 80294 8333502 ~ 8353815 (+) False LOC113544929
XR_004579838.1 other downstream 80410 8333618 ~ 8353841 (+) True LOC113544929

Expression Profile