RNA id: TU314768


Basic Information

Item Value
RNA id TU314768
length 259
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G265638
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 8374551 ~ 8374809 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAAAACTACAAAAAGACAAAGTCAAGTAAATCCAAATAAAACATAGTAGTAAAACATTATCAGTGCcagtaaattctagagactgctgATTTcatgggattttcacgcacaacagttaCAGATGGGCTCAAACCAGCCGGCACCAACAATCACGGTCATGGTCCAAATCACTGaggtcacatttttttcccattctaaTGGTTGATatgaacactaactgaagctcctgTCCCGTATCGGCATGATTTTATGGactgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314765 lncRNA upstream 32264 8340510 ~ 8342287 (+) True G265635
TU314751 lncRNA upstream 71632 8301196 ~ 8302919 (+) True G265622
TU314752 lncRNA upstream 72225 8299824 ~ 8302326 (+) False G265622
TU314677 lncRNA upstream 113797 8260516 ~ 8260754 (+) True G265565
TU314676 lncRNA upstream 114148 8260091 ~ 8260403 (+) True G265564
TU314777 lncRNA downstream 34837 8409646 ~ 8409861 (+) True G265647
TU314778 lncRNA downstream 36460 8411269 ~ 8411471 (+) True G265648
TU314785 lncRNA downstream 76380 8451189 ~ 8451413 (+) True G265655
XR_004579780.1 lncRNA downstream 175049 8549858 ~ 8643472 (+) True LOC113523758
TU314834 lncRNA downstream 248112 8622921 ~ 8626655 (+) False LOC113523758
XM_026944007.2 mRNA upstream 20710 8329705 ~ 8353841 (+) False LOC113544929
XM_034312463.1 mRNA upstream 157283 8200080 ~ 8217268 (+) True LOC117595648
XM_026943735.1 mRNA upstream 186941 8176891 ~ 8187610 (+) False tmem167a
XM_026943629.2 mRNA upstream 430423 7937228 ~ 7944128 (+) True cetn3
XM_026943628.2 mRNA upstream 430423 7937883 ~ 7944128 (+) False cetn3
XM_026909772.2 mRNA downstream 340620 8715429 ~ 8731985 (+) True rnft1
XM_026909767.2 mRNA downstream 697620 9072429 ~ 9076274 (+) True si:ch211-244c8.4
XM_026927880.2 mRNA downstream 760351 9135160 ~ 9151699 (+) True zdhhc20a
XM_026927881.2 mRNA downstream 760352 9135161 ~ 9151699 (+) False zdhhc20a
XM_026928171.2 mRNA downstream 841971 9216780 ~ 9252133 (+) True smyd4
XR_003404563.2 other upstream 20710 8333471 ~ 8353841 (+) False LOC113544929
XR_003404564.2 other upstream 20710 8333490 ~ 8353841 (+) False LOC113544929
XR_004579838.1 other upstream 20710 8333618 ~ 8353841 (+) True LOC113544929
TU314760 other upstream 20736 8333502 ~ 8353815 (+) False LOC113544929
XR_003404565.2 other upstream 98228 8275047 ~ 8276323 (+) True LOC113544932
TU314836 other downstream 258826 8633635 ~ 8639728 (+) True G265696
TU314948 other downstream 294005 8668814 ~ 8669797 (+) True G265807
TU315389 other downstream 960992 9335801 ~ 9336290 (+) True G266161
XR_003404427.2 other downstream 1044856 9419665 ~ 9424855 (+) True LOC113543674
XR_004579762.1 other downstream 1045659 9420468 ~ 9424855 (+) False LOC113543674

Expression Profile