RNA id: TU314778


Basic Information

Item Value
RNA id TU314778
length 203
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G265648
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 8411269 ~ 8411471 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTTAGGTTTCTTTCCAAATCTCTGTGAGAGCACCACCCCATGCTGGTCTCTGAAGCATCCACTTCCATAATGAAGGGCTTGGAGGGATCTGGGTGCTTCAGGATTGGAACCGGTGTGAACACTTCCTTGGGTCATTGGAATGGAATCACTGGAGTCTCTACCATGCCAGAGTCATCAGGAGAGCCACCAACATCATCAAGG

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314777 lncRNA upstream 1408 8409646 ~ 8409861 (+) True G265647
TU314768 lncRNA upstream 36460 8374551 ~ 8374809 (+) True G265638
TU314765 lncRNA upstream 68982 8340510 ~ 8342287 (+) True G265635
TU314751 lncRNA upstream 108350 8301196 ~ 8302919 (+) True G265622
TU314752 lncRNA upstream 108943 8299824 ~ 8302326 (+) False G265622
TU314785 lncRNA downstream 39718 8451189 ~ 8451413 (+) True G265655
XR_004579780.1 lncRNA downstream 138387 8549858 ~ 8643472 (+) True LOC113523758
TU314834 lncRNA downstream 211450 8622921 ~ 8626655 (+) False LOC113523758
XR_003402454.2 lncRNA downstream 211482 8622953 ~ 8643472 (+) False LOC113523758
XR_004579779.1 lncRNA downstream 211482 8622953 ~ 8626666 (+) False LOC113523758
XM_026944007.2 mRNA upstream 57428 8329705 ~ 8353841 (+) False LOC113544929
XM_034312463.1 mRNA upstream 194001 8200080 ~ 8217268 (+) True LOC117595648
XM_026943735.1 mRNA upstream 223659 8176891 ~ 8187610 (+) False tmem167a
XM_026943629.2 mRNA upstream 467141 7937228 ~ 7944128 (+) True cetn3
XM_026909772.2 mRNA downstream 303958 8715429 ~ 8731985 (+) True rnft1
XM_026909767.2 mRNA downstream 660958 9072429 ~ 9076274 (+) True si:ch211-244c8.4
XM_026927880.2 mRNA downstream 723689 9135160 ~ 9151699 (+) True zdhhc20a
XM_026927881.2 mRNA downstream 723690 9135161 ~ 9151699 (+) False zdhhc20a
XM_026928171.2 mRNA downstream 805309 9216780 ~ 9252133 (+) True smyd4
XR_003404563.2 other upstream 57428 8333471 ~ 8353841 (+) False LOC113544929
XR_003404564.2 other upstream 57428 8333490 ~ 8353841 (+) False LOC113544929
XR_004579838.1 other upstream 57428 8333618 ~ 8353841 (+) True LOC113544929
TU314760 other upstream 57454 8333502 ~ 8353815 (+) False LOC113544929
XR_003404565.2 other upstream 134946 8275047 ~ 8276323 (+) True LOC113544932
TU314836 other downstream 222164 8633635 ~ 8639728 (+) True G265696
TU314948 other downstream 257343 8668814 ~ 8669797 (+) True G265807
TU315389 other downstream 924330 9335801 ~ 9336290 (+) True G266161
XR_003404427.2 other downstream 1008194 9419665 ~ 9424855 (+) True LOC113543674
XR_004579762.1 other downstream 1008997 9420468 ~ 9424855 (+) False LOC113543674

Expression Profile