RNA id: XR_004579779.1


Basic Information

Item Value
RNA id XR_004579779.1
length 3312
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id LOC113523758
representative False

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 8549858 ~ 8643482 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCATTTCTTCCTTCTTCACAGCTAAGGGACACTCCAGGACAGTGTGGATGCTTCTTTTGTTATCATTTCTTAAGGACTCCTTCAATTTTTATATTGgttatatgtatttttgtggttctctcattatttttcttcattcttttttaaaatctagtaAAATTTTCTATTTGGGGAAAGGTTTTATATTGCTTAGCTCTCCTTCTGGGAGAAGCGGAGATAGAAGAAGGTAACCTTTAGCATGGGTGAGTAAAATTGGTGACCTACTTCCCCCCTTTCTTGTCTTCTTAAGCTCTGTTACCCAGTTTGTCGCCTCTCTCCAGAAGATATACCTTGAGGTGTAGGAGCCACACCAGCAGGTTAAAATGGAGTGGTGACTGTGGCCTGTTCAGGGTCTGGCTCCTGAGGGATGCTGAGTCATGCTCAGCAGGTGGAGCTGCTATGACTGAAGTGTACACTCCCCCACGTCACTCACAACCCCCACCTTCCATCCCCCTTCCCCTCAGCAAGCGAACCCTGTTGAACTCAATGCAGGCTGACCGAGACAGGAGGGGCCCCCAGGGGCTGAGAGGGTGGGGGAATTCTACTCCCAATTCCTGCCACTAACAATCTCTCACAACTCTGTGGAAGCTGTGGAAACAAAGACTCTACACCTTTTACCTTATTGCTCTTCTAGGATGAAAACTCGCTCTCCTCGGTGTTTGAGAAGGTGGTGACCATCTTTTTTcgtgatgagtgtgtgagtgagtggcAGAAATATTCAGAGGGTAAAATTAGAAAACTTTGTGTGGGTATAGTTGTGTGCTCATAAAAAGAGTCAGAAAGAAATAGATTTACTTTCACCAGGTTGTTTCACTCACATACTACCTGAGTCAGTCTGTATTTCtcaaattttttaatatttttttgtctgtctgtatttctcCTTTGTACCTGTGGAAAATTATTTGGCTTCTTAGAGAGTTTAATATAGTAAATGGGGCTGAAGATGTGTAAGGTTGCTTTAGTCGCACAGCAGCGTCATGTGTTTTGGAAGAAAATGATCATCTTTATTTTACAAGCAAGTGCAGGAACTTATTGACCAATAAGGTCTTCAGATTATGACATCTAGACATATTTTAGTCTCTATAAATTAATGTATATAAGCAGTGCCTAAATTAttagcaattttatttataatggctAGATATGATACTTATATAtctgattatacattttattaaggTTACAAAAAGTAGGGTATTTTGTCTGTCATCCTTTACATTTGGGTTCTGAAAAAGGGTTGGTGTTGAACACTGAAACTGTAATAAGGATCAATGAATCATACTGTAGCTTCCTGTAGTTATTGTTTAATTTCCAGAGACCGAGAAACAGCATGTTATTCAGACCAGAGCTTCACAACCAGATGcaataatatatacactcacatgAACATGTATTTGTCAGAGATtgtggatgagtggatggaggCTCACTGTTCTTGAGGAGTTCATCTTTAGGTGTATGTTGTATATCTCACTGAGGTCTTGTCTAAAATATTCTCTGATCAGAACTGTGCTTATACTGACAGCAGAATACTGACTACTGATGGGATGTCACTGCTTATTTTAATGAGACTGGCTGATAGTATGTCTGACATTTGTGACTACTTTTTACATTCTTGAGGATTTCAACTTTATGTGTATGTTTTAAATCTCACTGGGATCTTCTCTAAAATACTCCCTGATCAGAACTGTGCTTATATTTGAATATAAGCTTATATTGATGGGCTGTCGCTGCTTATGTTAATGAGACTGGCTAATAATATGTCTGACATTGTGACTactttttgagtttttctttaagtaagaaaagaaaatagtgCTATTCATTCAGAATTTTCTAAACAATGTTAAAgatttttgtgttcttttatgCCTGGTCTTGGCATCCATAATATGGCTTACAAATAATGCAAtgtcataatttattttttgttcctGGATGGTGCAAAAGTTTCTttgcttccatttttttcctttttttttttttttaaataattgcttGTAATATGTTTTCTCCCTCATCTGTGCTTTTTTGTAACACTGCCCTGGTATGTTAGCCTGGAAGCTTCAGGCATATAAAAAAATGGAACAGTGTGGGGTTTCTTTGCTGTTACCTTAGCTGAACCCTGGGCTGAACTCAATGCACTGTACTGCTGGCAGGAAGGAtatgaagaagagagagaaagggagaaacaGGCAAGAGGCTAGAGCGTGTTCAGCTAGCAGACATGCTCGTCAGTGAATGGAAAACACATTTTGAACTGCTATAACAGGACATATTCTGTTACAAAATAACAGAATATGGCCTCCGACAACCACCTCCTACCATTCTTCTTTGTCTATGGTAAgcattcttttctttcctttccattttttttcttcatgtgtgGCTCAGGCatttccatccatctctcccAGTGTGTCAGATAGCTTATCAGACTGGTGTTGGCTGTTTCATTGCATGGCGACAACAGTCTGTAGGCTGTCTGACATTTTGGGCTTTTTCatccaaaaatattatttgtaatctccaaagtttgttttagtgttATTTGTTGTCTTGCTTTTAACAGTCTGCCATGGTTCAATTATTTGAGCTGACATTTTCCCTTTAAACTACATGGTagtacagttttaaaaatgtgtagtgGAAATTACTGCTATATTTAATTCTCTACATTTCTGTTCATACATTTCTATactagagagaaagagagagagagtctctgGAGCTATCCTTCATCTACTTATGTTTCTTACAAATCCAGAATGCACCTTATACAATGTTATGGTTATGACACAGTACATAACATACAATGTTATGACACAGTTTTGCTGTTTGGTATGCTTTCCCCTCTCCTGTTTATTGCCTTTATGGATCAATGTTACTTTGTCTCTGGGTCTGCATTAatttcttcattcttttttgCTTAAATTATGGTTTAACTTGGCATACACTCTTGTCCCTCTggtggaacccttaaaggttttatgcccttttaggaggctaagaacccttaaaaaATGTCTCAAGAACCCAAGAGTGCACCTTTCTTTTTTACCTTGGATTTGTGATCCAAGGTAGAGCCCTTTTTAGCATTGTAAAACTTTGGAATGGTCTGTTTGGCTTGCAGACAATGTTTGCTTTCGTAGTTCTGAACATTCTGTTTTAACCCCCTTCTTGGTAAATTTTGCTTTTGTGTATGATTATTTGTATGattatataagtgtgtgtattaagaaaaataaataaggttGCTTTAATGCTta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314785 lncRNA upstream 171540 8451189 ~ 8451413 (+) True G265655
TU314778 lncRNA upstream 211482 8411269 ~ 8411471 (+) True G265648
TU314777 lncRNA upstream 213092 8409646 ~ 8409861 (+) True G265647
TU314768 lncRNA upstream 248144 8374551 ~ 8374809 (+) True G265638
TU314765 lncRNA upstream 280666 8340510 ~ 8342287 (+) True G265635
TU314839 lncRNA downstream 13608 8640274 ~ 8640593 (+) True G265699
TU314837 lncRNA downstream 14415 8641081 ~ 8643482 (+) False LOC113523758
TU314938 lncRNA downstream 16891 8643557 ~ 8646201 (+) True G265797
TU314942 lncRNA downstream 24355 8651021 ~ 8651367 (+) True G265801
TU314943 lncRNA downstream 30032 8656698 ~ 8657086 (+) True G265802
XM_026944007.2 mRNA upstream 269112 8329705 ~ 8353841 (+) False LOC113544929
XM_034312463.1 mRNA upstream 405685 8200080 ~ 8217268 (+) True LOC117595648
XM_026943735.1 mRNA upstream 435343 8176891 ~ 8187610 (+) False tmem167a
XM_026943629.2 mRNA upstream 678825 7937228 ~ 7944128 (+) True cetn3
XM_026909772.2 mRNA downstream 88763 8715429 ~ 8731985 (+) True rnft1
XM_026909767.2 mRNA downstream 445763 9072429 ~ 9076274 (+) True si:ch211-244c8.4
XM_026927880.2 mRNA downstream 508494 9135160 ~ 9151699 (+) True zdhhc20a
XM_026927881.2 mRNA downstream 508495 9135161 ~ 9151699 (+) False zdhhc20a
XM_026928171.2 mRNA downstream 590114 9216780 ~ 9252133 (+) True smyd4
XR_003404563.2 other upstream 269112 8333471 ~ 8353841 (+) False LOC113544929
XR_003404564.2 other upstream 269112 8333490 ~ 8353841 (+) False LOC113544929
XR_004579838.1 other upstream 269112 8333618 ~ 8353841 (+) True LOC113544929
TU314760 other upstream 269138 8333502 ~ 8353815 (+) False LOC113544929
XR_003404565.2 other upstream 346630 8275047 ~ 8276323 (+) True LOC113544932
TU314836 other downstream 6969 8633635 ~ 8639728 (+) True G265696
TU314948 other downstream 42148 8668814 ~ 8669797 (+) True G265807
TU315389 other downstream 709135 9335801 ~ 9336290 (+) True G266161
XR_003404427.2 other downstream 792999 9419665 ~ 9424855 (+) True LOC113543674
XR_004579762.1 other downstream 793802 9420468 ~ 9424855 (+) False LOC113543674

Expression Profile