RNA id: XR_004579780.1


Basic Information

Item Value
RNA id XR_004579780.1
length 5155
lncRNA type inter_gene
GC content 0.44
exon number 7
gene id LOC113523758
representative True

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 8549858 ~ 8643482 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttctctctgtgctttCCTCTTATTTGCCCCGTCTCCTCTGTTGATCTTCATAGCTGATCTCTTGTTTTCTCCATGTGCGCCTGCATACATCTCTGAGGTGCTGCCCCTTCTTCGCAGTATGTGCAGCTTCTGGAGCTGTGCCTCTTCTGTGTCTCCTGGGTCCTCTTGGGTGTTCTCGCTTCAGTTCAGCTAAGCTGCTTGCATGCCTCCCTCCTTTACCTGGGCCACCACATAGTTTAAGTCACACTTGCTGCCTCTGAATCTGTGGAGTTCCTGTTAAGTTCCCCGCCCCCCGGCAAGGGCAAGAGGGAAGGAACAAGCAGAGAAGGGATGTATGAGGGTGAAGGCATGTATGAGGggtGCAGCCAGCACTTTAGGGAGCGCTCTACCCAAACTCTGTGGCCTGGGCTGCTTGGATGATGAAGAAGAGGGAAAGGAATTTTTGAGGAATTTGAGCAGATGCTGGAACAGCTCTGTTACCCAGTTTGTCGCCTCTCTCCAGAAGATATACCTTGAGGTGTAGGAGCCACACCAGCAGGTTAAAATGGAGTGGTGACTGTGGCCTGTTCAGGGTCTGGCTCCTGAGGGATGCTGAGTCATGCTCAGCAGGTGGAGCTGCTATGACTGAAGTGTACACTCCCCCACGTCACTCACAACCCCCACCTTCCATCCCCCTTCCCCTCAGCAAGCGAACCCTGTTGAACTCAATGCAGGCTGACCGAGACAGGAGGGGCCCCCAGGGGCTGAGAGGGTGGGGGAATTCTACTCCCAATTCCTGCCACTAACAATCTCTCACAACTCTGTGGAAGCTGTGGAAACAAAGACTCTACACCTTTTACCTTATTGCTCTTCTAGGATGAAAACTCGCTCTCCTCGGTGTTTGAGAAGGTGGTGACCATCTTTTTTcgtgatgagtgtgtgagtgagtggcAGAAATATTCAGAGGGTAAAATTAGAAAACTTTGTGTGGGTATAGTTGTGTGCTCATAAAAAGAGTCAGAAAGAAATAGATTTACTTTCACCAGGTTGTTTCACTCACATACTACCTGAGTCAGTCTGTATTTCtcaaattttttaatatttttttgtctgtctgtatttctcCTTTGTACCTGTGGAAAATTATTTGGCTTCTTAGAGAGTTTAATATAGTAAATGGGGCTGAAGATGTGTAAGGTTGCTTTAGTCGCACAGCAGCGTCATGTGTTTTGGAAGAAAATGATCATCTTTATTTTACAAGCAAGTGCAGGAACTTATTGACCAATAAGGTCTTCAGATTATGACATCTAGACATATTTTAGTCTCTATAAATTAATGTATATAAGCAGTGCCTAAATTAttagcaattttatttataatggctAGATATGATACTTATATAtctgattatacattttattaaggTTACAAAAAGTAGGGTATTTTGTCTGTCATCCTTTACATTTGGGTTCTGAAAAAGGGTTGGTGTTGAACACTGAAACTGTAATAAGGATCAATGAATCATACTGTAGCTTCCTGTAGTTATTGTTTAATTTCCAGAGACCGAGAAACAGCATGTTATTCAGACCAGAGCTTCACAACCAGATGcaataatatatacactcacatgAACATGTATTTGTCAGAGATtgtggatgagtggatggaggCTCACTGTTCTTGAGGAGTTCATCTTTAGGTGTATGTTGTATATCTCACTGAGGTCTTGTCTAAAATATTCTCTGATCAGAACTGTGCTTATACTGACAGCAGAATACTGACTACTGATGGGATGTCACTGCTTATTTTAATGAGACTGGCTGATAGTATGTCTGACATTTGTGACTACTTTTTACATTCTTGAGGATTTCAACTTTATGTGTATGTTTTAAATCTCACTGGGATCTTCTCTAAAATACTCCCTGATCAGAACTGTGCTTATATTTGAATATAAGCTTATATTGATGGGCTGTCGCTGCTTATGTTAATGAGACTGGCTAATAATATGTCTGACATTGTGACTactttttgagtttttctttaagtaagaaaagaaaatagtgCTATTCATTCAGAATTTTCTAAACAATGTTAAAgatttttgtgttcttttatgCCTGGTCTTGGCATCCATAATATGGCTTACAAATAATGCAAtgtcataatttattttttgttcctGGATGGTGCAAAAGTTTCTttgcttccatttttttcctttttttttttttttaaataattgcttGTAATATGTTTTCTCCCTCATCTGTGCTTTTTTGTAACACTGCCCTGGTATGTTAGCCTGGAAGCTTCAGGCATATAAAAAAATGGAACAGTGTGGGGTTTCTTTGCTGTTACCTTAGCTGAACCCTGGGCTGAACTCAATGCACTGTACTGCTGGCAGGAAGGAtatgaagaagagagagaaagggagaaacaGGCAAGAGGCTAGAGCGTGTTCAGCTAGCAGACATGCTCGTCAGTGAATGGAAAACACATTTTGAACTGCTATAACAGGACATATTCTGTTACAAAATAACAGAATATGGCCTCCGACAACCACCTCCTACCATTCTTCTTTGTCTATGATTGGGCAGTTCTTAAAGAAAGCTGTAAAAGACAGCATAAGGAACACAGTTGTACTGCGACAAGGAAGCAGATTTACTGGAGAAAGAATAAGGACAATGGATCGAAGATTTCTTTATATGGCTCCAGAATGTCTGATTGAATTTGAGCAGGCTTCCAGAAGCTCTGACGTGTGATCTCTAGTAGCAACATACCTGGAGAAAGTTAGTGCCATGGACAGTGAAAAACCAAAGACAGTGGTCTAATGGCCACAAAAGTGCAGCCACATGCTTTGCAATATCTAAGTGAAAGGTATGTGTTTATTGGTACAATGGTGCACTATGACCCTGTAGCACTGCCAAATATTGCCGCTTTTTTATATGAGTGTTTAGTTACTGTAATTACCACAATGTTATTGATTAGTGCTGTCTTGTTGCCACCAATGACTAAGTGTTTGGTTCTGTGCTTGTGTTATCGTGAGACTCAACGAGGGCACCGCACTGTACACCTCATCACTGTGTCAATGATGGCTTTTCTTTGCTCTGCTTGAAGTGGAGGACAGATATCACGGAAGAGGAGCTGGTTAGCCGCATCCTTGACAACATCCTAGGGTTTTAGGCTGCCTAAGAGGGACAGTAATTACTGTCTAACCGCTGGTCATGGTGGGCTCCAGGATAGAGAAAAATTGCATGGGAGCGAAGGACTATTGGCAAAAAGGTGGGTATGCCAAAGAAAGTGCCAAAGAAAAGGATCTCCTGAAACCACCCATAAACCGAGGTCCCAAAGATCTTGCCGGGGTGTCAATCACACAGCCTCATGACTCCAGGCTCATAACTCCCTCCCTACTGCAGGTACCACTAATGGTTGCTGGGAAGAAGTAAAAGTGATCATTGACACAGGCAGCACTTATACCATGATGCAGCAAAAGCTATGGAGAAAACTTAGAAAGGATACAACCAACATTGACCCTCACCACCAGCAAAAAATCGTTATGGCAGATAGGAAATTGCATTACTCCAGAGCCAAGAGGCCCATCCCTATGAATGGCACGGTACTACCTGGCCATTAGACACCTAATGGATGATGCCCACCTGACCTTTCCCAGTATCCTGGGGTTAGACTTCCTTATAGATACCCCAGCAATTCTTGATGTGGCTAACAACCAGTACGGGCCATGTTTACCATCCGTTCATTCATCACCAGTGGACGCCAGAACCTCGTAAGCACAAACAATAAAAGCTAGATTCAGCAGTAACTCTGTAGTATGTCTTACCACCAGTACCAACATGTCTGACAGCATCCTGCAACAGCATCCCGTGAGGAGTCTGCTCCCAAGTGGGACTCCGACAATCAGCAGGAGCTGAGGAAGCTGATAGGAAGCTGGTCCTCACCTGTGGTTTTAGTGCCAAAACCGGACAACTCGGACTGGTTTTGTGCCTCTCATCACCTCCAATGCGCTGGGCCAGACCACCATGGTGAAACATCGAGTCTCCACCTGGGACAAGGTACCAGTAAAAAGCAGAGCATACAGAGTGTCACCATTAAAAAGGACATAATAGAAGAGCATGTTGACAGAATGTTACATGATGGCATCATAGAGGCCAAAATGGTCCTCACCTGTGGTTTTAGTGCCAAAACCGGACAACTCGGACTGGTTTTGTGTCGATTACAGGAAGGTGAACAGCAAAACCATATCGGATGCTTATCCAATTCCCATACTGCATGATATCCTTGAATCCTTGGAAGGTGTGTCCTGGTTCACGACTTTGGATTTGCAGTCCAGATATTGGCAGGTGGAAATGGAGGAAGAAAGTAAGCAGAAGATGGCCTTTATCACCACCAAGCTGACACTGCCAAAACCCAAGTGGTGGCAGACTACTCAGTGCCAGCTGATCTGTTCAACTTCCAAGTGTGCTACAGAAAGGCCTATCAGAAAGGACACCTGACCAGAGCTTCTTACATTACTTCCACTCAACCCGTTAGGTAGGTCTCGGGTAGGATGAAGACCATGCTACATGTTCTGGAAGTAGCCTGGTGGCTGACAGTACAAAAAGACATCTGGTAGTATATCAAGCTGTGTGCCACCTGCCAAAAATATAAGTATGAAAACACCAAACTACAGACGTACCAGATTTGGGGTACACTCTTGGGACAGACCTCATGGGACCTTTCGCTGCCAGTAAAAGGAAAAACGCCTACCTGCTGGTGATCATGGATTACTTTACCAAGTGGGTAGAGATGTTCCCTCTGCAAGACAGTAAAACCCTAAGATTGTGAAAATACTTAAGGAGGAGATCTTTAACCAAAGGGGAGTACCCAAGTTCTTGGTCTCTGATTGTGGCCTCCAGTTTACATTATTGGTGCTGGCGGACCTTTGCAAAAACTAACCATGAGCTAACACCCGCAAAGAAACCTGACAGAAAGAGTCAACAGAACCCTAAAAGTCATTCTGTTGTCTTAGGTTGGAGACCAGCATGATACCTGGGACCAGTGGATCCCCGAATTCAGGTTTGCCATAAATACCATGGCAAGCCATAATCATACATTATGAACCATGGCATGccataaatcataaattatgATAAGCagcactgccacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314785 lncRNA upstream 98445 8451189 ~ 8451413 (+) True G265655
TU314778 lncRNA upstream 138387 8411269 ~ 8411471 (+) True G265648
TU314777 lncRNA upstream 139997 8409646 ~ 8409861 (+) True G265647
TU314768 lncRNA upstream 175049 8374551 ~ 8374809 (+) True G265638
TU314765 lncRNA upstream 207571 8340510 ~ 8342287 (+) True G265635
TU314938 lncRNA downstream 85 8643557 ~ 8646201 (+) True G265797
TU314942 lncRNA downstream 7549 8651021 ~ 8651367 (+) True G265801
TU314943 lncRNA downstream 13226 8656698 ~ 8657086 (+) True G265802
TU314950 lncRNA downstream 21310 8664782 ~ 8665655 (+) True G265809
TU314949 lncRNA downstream 24150 8667622 ~ 8668664 (+) True G265808
XM_026944007.2 mRNA upstream 196017 8329705 ~ 8353841 (+) False LOC113544929
XM_034312463.1 mRNA upstream 332590 8200080 ~ 8217268 (+) True LOC117595648
XM_026943735.1 mRNA upstream 362248 8176891 ~ 8187610 (+) False tmem167a
XM_026943629.2 mRNA upstream 605730 7937228 ~ 7944128 (+) True cetn3
XM_026909772.2 mRNA downstream 71957 8715429 ~ 8731985 (+) True rnft1
XM_026909767.2 mRNA downstream 428957 9072429 ~ 9076274 (+) True si:ch211-244c8.4
XM_026927880.2 mRNA downstream 491688 9135160 ~ 9151699 (+) True zdhhc20a
XM_026927881.2 mRNA downstream 491689 9135161 ~ 9151699 (+) False zdhhc20a
XM_026928171.2 mRNA downstream 573308 9216780 ~ 9252133 (+) True smyd4
XR_003404563.2 other upstream 196017 8333471 ~ 8353841 (+) False LOC113544929
XR_003404564.2 other upstream 196017 8333490 ~ 8353841 (+) False LOC113544929
XR_004579838.1 other upstream 196017 8333618 ~ 8353841 (+) True LOC113544929
TU314760 other upstream 196043 8333502 ~ 8353815 (+) False LOC113544929
XR_003404565.2 other upstream 273535 8275047 ~ 8276323 (+) True LOC113544932
TU314948 other downstream 25342 8668814 ~ 8669797 (+) True G265807
TU315389 other downstream 692329 9335801 ~ 9336290 (+) True G266161
XR_003404427.2 other downstream 776193 9419665 ~ 9424855 (+) True LOC113543674
XR_004579762.1 other downstream 776996 9420468 ~ 9424855 (+) False LOC113543674
XR_004579824.1 other downstream 1060888 9704360 ~ 9754590 (+) False dclk1a

Expression Profile