Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU314943 |
| length | 389 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 1 |
| gene id | G265802 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 8656698 ~ 8657086 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0007229 | integrin-mediated signaling pathway | biological_process |
| GO:0005201 | extracellular matrix structural constituent | molecular_function |
| id | description |
|---|---|
| ko04512 | ECM-receptor interaction |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU314942 | lncRNA | upstream | 5331 | 8651021 ~ 8651367 (+) | True | G265801 |
| TU314938 | lncRNA | upstream | 10497 | 8643557 ~ 8646201 (+) | True | G265797 |
| TU314837 | lncRNA | upstream | 13216 | 8641081 ~ 8643482 (+) | False | LOC113523758 |
| XR_003402454.2 | lncRNA | upstream | 13226 | 8622953 ~ 8643472 (+) | False | LOC113523758 |
| TU314950 | lncRNA | downstream | 7696 | 8664782 ~ 8665655 (+) | True | G265809 |
| TU314949 | lncRNA | downstream | 10536 | 8667622 ~ 8668664 (+) | True | G265808 |
| TU314951 | lncRNA | downstream | 21040 | 8678126 ~ 8681571 (+) | True | G265810 |
| TU314965 | lncRNA | downstream | 30747 | 8687833 ~ 8689686 (+) | True | G265823 |
| XR_003402456.2 | lncRNA | downstream | 33951 | 8691037 ~ 8693401 (+) | True | LOC113523760 |
| XM_026944007.2 | mRNA | upstream | 302857 | 8329705 ~ 8353841 (+) | False | LOC113544929 |
| XM_034312463.1 | mRNA | upstream | 439430 | 8200080 ~ 8217268 (+) | True | LOC117595648 |
| XM_026943735.1 | mRNA | upstream | 469088 | 8176891 ~ 8187610 (+) | False | tmem167a |
| XM_026943629.2 | mRNA | upstream | 712570 | 7937228 ~ 7944128 (+) | True | cetn3 |
| XM_026909772.2 | mRNA | downstream | 58343 | 8715429 ~ 8731985 (+) | True | rnft1 |
| XM_026909767.2 | mRNA | downstream | 415343 | 9072429 ~ 9076274 (+) | True | si:ch211-244c8.4 |
| XM_026927880.2 | mRNA | downstream | 478074 | 9135160 ~ 9151699 (+) | True | zdhhc20a |
| XM_026927881.2 | mRNA | downstream | 478075 | 9135161 ~ 9151699 (+) | False | zdhhc20a |
| XM_026928171.2 | mRNA | downstream | 559694 | 9216780 ~ 9252133 (+) | True | smyd4 |
| TU314836 | other | upstream | 16970 | 8633635 ~ 8639728 (+) | True | G265696 |
| XR_003404563.2 | other | upstream | 302857 | 8333471 ~ 8353841 (+) | False | LOC113544929 |
| TU314948 | other | downstream | 11728 | 8668814 ~ 8669797 (+) | True | G265807 |
| TU315389 | other | downstream | 678715 | 9335801 ~ 9336290 (+) | True | G266161 |
| XR_003404427.2 | other | downstream | 762579 | 9419665 ~ 9424855 (+) | True | LOC113543674 |
| XR_004579762.1 | other | downstream | 763382 | 9420468 ~ 9424855 (+) | False | LOC113543674 |
| XR_004579824.1 | other | downstream | 1047274 | 9704360 ~ 9754590 (+) | False | dclk1a |
